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Characterization of Genome-Wide Variation in Four-Row Wax, a Waxy Maize Landrace with a Reduced Kernel Row Phenotype

Overview of attention for article published in Frontiers in Plant Science, May 2016
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Title
Characterization of Genome-Wide Variation in Four-Row Wax, a Waxy Maize Landrace with a Reduced Kernel Row Phenotype
Published in
Frontiers in Plant Science, May 2016
DOI 10.3389/fpls.2016.00667
Pubmed ID
Authors

Hanmei Liu, Xuewen Wang, Bin Wei, Yongbin Wang, Yinghong Liu, Junjie Zhang, Yufeng Hu, Guowu Yu, Jian Li, Zhanbin Xu, Yubi Huang

Abstract

In southwest China, some maize landraces have long been isolated geographically, and have phenotypes that differ from those of widely grown cultivars. These landraces may harbor rich genetic variation responsible for those phenotypes. Four-row Wax is one such landrace, with four rows of kernels on the cob. We resequenced the genome of Four-row Wax, obtaining 50.46 Gb sequence at 21.87× coverage, then identified and characterized 3,252,194 SNPs, 213,181 short InDels (1-5 bp) and 39,631 structural variations (greater than 5 bp). Of those, 312,511 (9.6%) SNPs were novel compared to the most detailed haplotype map (HapMap) SNP database of maize. Characterization of variations in reported kernel row number (KRN) related genes and KRN QTL regions revealed potential causal mutations in fea2, td1, kn1, and te1. Genome-wide comparisons revealed abundant genetic variations in Four-row Wax, which may be associated with environmental adaptation. The sequence and SNP variations described here enrich genetic resources of maize, and provide guidance into study of seed numbers for crop yield improvement.

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Mendeley readers

The data shown below were compiled from readership statistics for 16 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 16 100%

Demographic breakdown

Readers by professional status Count As %
Student > Master 5 31%
Student > Ph. D. Student 4 25%
Professor 2 13%
Student > Doctoral Student 1 6%
Other 1 6%
Other 2 13%
Unknown 1 6%
Readers by discipline Count As %
Agricultural and Biological Sciences 10 63%
Biochemistry, Genetics and Molecular Biology 2 13%
Materials Science 1 6%
Unknown 3 19%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 18 May 2016.
All research outputs
#22,758,309
of 25,373,627 outputs
Outputs from Frontiers in Plant Science
#19,712
of 24,597 outputs
Outputs of similar age
#305,643
of 349,750 outputs
Outputs of similar age from Frontiers in Plant Science
#400
of 533 outputs
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