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High-Throughput Sequencing Reveals Single Nucleotide Variants in Longer-Kernel Bread Wheat

Overview of attention for article published in Frontiers in Plant Science, August 2016
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Title
High-Throughput Sequencing Reveals Single Nucleotide Variants in Longer-Kernel Bread Wheat
Published in
Frontiers in Plant Science, August 2016
DOI 10.3389/fpls.2016.01193
Pubmed ID
Authors

Feng Chen, Zibo Zhu, Xiaobian Zhou, Yan Yan, Zhongdong Dong, Dangqun Cui

Abstract

The transcriptomes of bread wheat Yunong 201 and its ethyl methanesulfonate derivative Yunong 3114 were obtained by next-sequencing technology. Single nucleotide variants (SNVs) in the wheat strains were explored and compared. A total of 5907 and 6287 non-synonymous SNVs were acquired for Yunong 201 and 3114, respectively. A total of 4021 genes with SNVs were obtained. The genes that underwent non-synonymous SNVs were significantly involved in ATP binding, protein phosphorylation, and cellular protein metabolic process. The heat map analysis also indicated that most of these mutant genes were significantly differentially expressed at different developmental stages. The SNVs in these genes possibly contribute to the longer kernel length of Yunong 3114. Our data provide useful information on wheat transcriptome for future studies on wheat functional genomics. This study could also help in illustrating the gene functions of the non-synonymous SNVs of Yunong 201 and 3114.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 10 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Mexico 1 10%
Unknown 9 90%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 4 40%
Researcher 2 20%
Other 1 10%
Student > Postgraduate 1 10%
Unknown 2 20%
Readers by discipline Count As %
Agricultural and Biological Sciences 8 80%
Unknown 2 20%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 24 August 2016.
All research outputs
#13,124,909
of 22,882,389 outputs
Outputs from Frontiers in Plant Science
#5,897
of 20,270 outputs
Outputs of similar age
#192,308
of 364,241 outputs
Outputs of similar age from Frontiers in Plant Science
#121
of 469 outputs
Altmetric has tracked 22,882,389 research outputs across all sources so far. This one is in the 42nd percentile – i.e., 42% of other outputs scored the same or lower than it.
So far Altmetric has tracked 20,270 research outputs from this source. They receive a mean Attention Score of 4.0. This one has gotten more attention than average, scoring higher than 70% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 364,241 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 46th percentile – i.e., 46% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 469 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 73% of its contemporaries.