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DNA-Protein Interactions

Overview of attention for book
Cover of 'DNA-Protein Interactions'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Electrophoretic Mobility Shift Assay Using Radiolabeled DNA Probes
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    Chapter 2 In Vitro DNase I Footprinting
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    Chapter 3 DNA-Protein Interactions
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    Chapter 4 In Cellulo DNA Analysis: LMPCR Footprinting.
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    Chapter 5 Southwestern Blotting Assay
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    Chapter 6 Single-Molecule Approaches for the Characterization of Riboswitch Folding Mechanisms
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    Chapter 7 Probing of Nascent Riboswitch Transcripts
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    Chapter 8 DNA-Protein Interactions
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    Chapter 9 Precise Identification of Genome-Wide Transcription Start Sites in Bacteria by 5'-Rapid Amplification of cDNA Ends (5'-RACE).
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    Chapter 10 Analysis of DNA Supercoiling Induced by DNA-Protein Interactions.
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    Chapter 11 Precise Identification of DNA-Binding Proteins Genomic Location by Exonuclease Coupled Chromatin Immunoprecipitation (ChIP-exo).
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    Chapter 12 The Cruciform DNA Mobility Shift Assay: A Tool to Study Proteins That Recognize Bent DNA.
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    Chapter 13 Individual and Sequential Chromatin Immunoprecipitation Protocols.
  15. Altmetric Badge
    Chapter 14 Chromatin Endogenous Cleavage (ChEC) as a Method to Quantify Protein Interaction with Genomic DNA in Saccharomyces cerevisiae.
  16. Altmetric Badge
    Chapter 15 Selection and Validation of Spacer Sequences for CRISPR-Cas9 Genome Editing and Transcription Regulation in Bacteria.
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    Chapter 16 Detection of Short-Range DNA Interactions in Mammalian Cells Using High-Resolution Circular Chromosome Conformation Capture Coupled to Deep Sequencing.
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    Chapter 17 Global Mapping of Open Chromatin Regulatory Elements by Formaldehyde-Assisted Isolation of Regulatory Elements Followed by Sequencing (FAIRE-seq).
  19. Altmetric Badge
    Chapter 18 Aggregate and Heatmap Representations of Genome-Wide Localization Data Using VAP, a Versatile Aggregate Profiler.
  20. Altmetric Badge
    Chapter 19 Circular Dichroism for the Analysis of Protein–DNA Interactions
  21. Altmetric Badge
    Chapter 20 Quantitative Investigation of Protein–Nucleic Acid Interactions by Biosensor Surface Plasmon Resonance
  22. Altmetric Badge
    Chapter 21 Identification of Nucleic Acid High Affinity Binding Sequences of Proteins by SELEX
Attention for Chapter 15: Selection and Validation of Spacer Sequences for CRISPR-Cas9 Genome Editing and Transcription Regulation in Bacteria.
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About this Attention Score

  • Above-average Attention Score compared to outputs of the same age (53rd percentile)
  • Good Attention Score compared to outputs of the same age and source (77th percentile)

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Chapter title
Selection and Validation of Spacer Sequences for CRISPR-Cas9 Genome Editing and Transcription Regulation in Bacteria.
Chapter number 15
Book title
DNA-Protein Interactions
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2877-4_15
Pubmed ID
Book ISBNs
978-1-4939-2876-7, 978-1-4939-2877-4
Authors

Grenier, Frédéric, Lucier, Jean-François, Rodrigue, Sébastien, Frédéric Grenier, Jean-François Lucier, Sébastien Rodrigue

Abstract

RNA-guided Cas9 nucleases derived from clustered regularly interspaced short palindromic repeat (CRISPR)-Cas systems have recently been adapted as sequence-programmable tools for various purposes such as genome editing and transcriptional regulation. A critical aspect of the system is the selection and validation of spacer sequences that allow precise targeting of the guide RNA-Cas9 complex. We describe a procedure involving computational and experimental steps to identify and test potentially interesting spacer sequences in bacterial genomes.

X Demographics

X Demographics

The data shown below were collected from the profiles of 4 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 17 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 17 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 4 24%
Other 2 12%
Professor > Associate Professor 2 12%
Student > Master 2 12%
Student > Ph. D. Student 1 6%
Other 1 6%
Unknown 5 29%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 6 35%
Agricultural and Biological Sciences 3 18%
Immunology and Microbiology 1 6%
Psychology 1 6%
Engineering 1 6%
Other 0 0%
Unknown 5 29%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 23 June 2016.
All research outputs
#13,029,069
of 23,070,218 outputs
Outputs from Methods in molecular biology
#3,306
of 13,201 outputs
Outputs of similar age
#165,207
of 354,381 outputs
Outputs of similar age from Methods in molecular biology
#224
of 998 outputs
Altmetric has tracked 23,070,218 research outputs across all sources so far. This one is in the 43rd percentile – i.e., 43% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,201 research outputs from this source. They receive a mean Attention Score of 3.4. This one has gotten more attention than average, scoring higher than 74% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 354,381 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 53% of its contemporaries.
We're also able to compare this research output to 998 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 77% of its contemporaries.