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Plant Bioinformatics

Overview of attention for book
Cover of 'Plant Bioinformatics'

Table of Contents

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    Book Overview
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    Chapter 1 Using GenBank.
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    Chapter 2 UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View.
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    Chapter 3 KEGG Bioinformatics Resource for Plant Genomics and Metabolomics.
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    Chapter 4 Plant Bioinformatics
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    Chapter 5 The Plant Ontology: A Tool for Plant Genomics.
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    Chapter 6 Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomics Data.
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    Chapter 7 Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.
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    Chapter 8 PGSB/MIPS Plant Genome Information Resources and Concepts for the Analysis of Complex Grass Genomes.
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    Chapter 9 MaizeGDB: The Maize Genetics and Genomics Database.
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    Chapter 10 WheatGenome.info: A Resource for Wheat Genomics Resource.
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    Chapter 11 User Guidelines for the Brassica Database: BRAD.
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    Chapter 12 TAG Sequence Identification of Genomic Regions Using TAGdb.
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    Chapter 13 Short Read Alignment Using SOAP2.
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    Chapter 14 Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings.
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    Chapter 15 Analysis of Genotyping-by-Sequencing (GBS) Data.
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    Chapter 16 Skim-Based Genotyping by Sequencing Using a Double Haploid Population to Call SNPs, Infer Gene Conversions, and Improve Genome Assemblies.
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    Chapter 17 Finding and Characterizing Repeats in Plant Genomes.
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    Chapter 18 Analysis of RNA-Seq Data Using TopHat and Cufflinks.
Attention for Chapter 13: Short Read Alignment Using SOAP2.
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