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Grapevine powdery mildew resistance and susceptibility loci identified on a high-resolution SNP map

Overview of attention for article published in Theoretical and Applied Genetics, September 2013
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Title
Grapevine powdery mildew resistance and susceptibility loci identified on a high-resolution SNP map
Published in
Theoretical and Applied Genetics, September 2013
DOI 10.1007/s00122-013-2202-x
Pubmed ID
Authors

Paola Barba, Lance Cadle-Davidson, James Harriman, Jeffrey C. Glaubitz, Siraprapa Brooks, Katie Hyma, Bruce Reisch

Abstract

Improved efficacy and durability of powdery mildew resistance can be enhanced via knowledge of the genetics of resistance and susceptibility coupled with the development of high-resolution maps to facilitate the stacking of multiple resistance genes and other desirable traits. We studied the inheritance of powdery mildew (Erysiphe necator) resistance and susceptibility of wild Vitis rupestris B38 and cultivated V. vinifera 'Chardonnay', finding evidence for quantitative variation. Molecular markers were identified using genotyping-by-sequencing, resulting in 16,833 single nucleotide polymorphisms (SNPs) based on alignment to the V. vinifera 'PN40024' reference genome sequence. With an average density of 36 SNPs/Mbp and uniform coverage of the genome, this 17K set was used to identify 11 SNPs on chromosome 7 associated with a resistance locus from V. rupestris B38 and ten SNPs on chromosome 9 associated with a locus for susceptibility from 'Chardonnay' using single marker association and linkage disequilibrium analysis. Linkage maps for V. rupestris B38 (1,146 SNPs) and 'Chardonnay' (1,215 SNPs) were constructed and used to corroborate the 'Chardonnay' locus named Sen1 (Susceptibility to Erysiphe necator 1), providing the first insight into the genetics of susceptibility to powdery mildew from V. vinifera. The identification of markers associated with a susceptibility locus in a V. vinifera background can be used for negative selection among breeding progenies. This work improves our understanding of the nature of powdery mildew resistance in V. rupestris B38 and 'Chardonnay', while applying next-generation sequencing tools to advance grapevine genomics and breeding.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 129 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Spain 2 2%
Italy 1 <1%
France 1 <1%
New Zealand 1 <1%
Uruguay 1 <1%
Unknown 123 95%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 37 29%
Researcher 26 20%
Student > Master 19 15%
Student > Doctoral Student 7 5%
Student > Postgraduate 6 5%
Other 16 12%
Unknown 18 14%
Readers by discipline Count As %
Agricultural and Biological Sciences 93 72%
Biochemistry, Genetics and Molecular Biology 12 9%
Business, Management and Accounting 2 2%
Unspecified 1 <1%
Social Sciences 1 <1%
Other 0 0%
Unknown 20 16%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 02 October 2013.
All research outputs
#19,201,293
of 23,794,258 outputs
Outputs from Theoretical and Applied Genetics
#3,124
of 3,565 outputs
Outputs of similar age
#154,235
of 205,978 outputs
Outputs of similar age from Theoretical and Applied Genetics
#8
of 13 outputs
Altmetric has tracked 23,794,258 research outputs across all sources so far. This one is in the 11th percentile – i.e., 11% of other outputs scored the same or lower than it.
So far Altmetric has tracked 3,565 research outputs from this source. They receive a mean Attention Score of 4.9. This one is in the 6th percentile – i.e., 6% of its peers scored the same or lower than it.
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We're also able to compare this research output to 13 others from the same source and published within six weeks on either side of this one. This one is in the 30th percentile – i.e., 30% of its contemporaries scored the same or lower than it.