Chapter 1 Sampling in Landscape Genomics

Chapter 2 OligoTag: A Program for Designing Sets of Tags for Next-Generation Sequencing of Multiplexed Samples

Chapter 3 SNP Discovery in Non-model Organisms Using 454 Next Generation Sequencing

Chapter 4 In Silico Fingerprinting (ISIF): A User-Friendly In Silico AFLP Program

Chapter 5 Diversity Arrays Technology: A Generic Genome Profiling Technology on Open Platforms

Chapter 6 Two Methods to Easily Obtain Nucleotide Sequences from AFLP Loci of Interest

Chapter 7 Roche Genome Sequencer FLX Based High-Throughput Sequencing of Ancient DNA

Chapter 8 Preparation of Normalized cDNA Libraries for 454 Titanium Transcriptome Sequencing

Chapter 9 RAD Paired-End Sequencing for Local De Novo Assembly and SNP Discovery in Non-model Organisms

Chapter 10 Automated Scoring of AFLPs Using RawGeno v 2.0, a Free R CRAN Library

Chapter 11 Haplotype Inference

Chapter 12 Allele identification in assembled genomic sequence datasets.

Chapter 13 Multiple Testing in Large-Scale Genetic Studies

Chapter 14 Population Genomic Analysis of Model and Nonmodel Organisms Using Sequenced RAD Tags.

Chapter 15 Analysis and management of gene and allelic diversity in subdivided populations using the software program METAPOP.

Chapter 16 D et S el : An R-Package to Detect Marker Loci Responding to Selection

Chapter 17 Use of Qualitative Environmental and Phenotypic Variables in the Context of Allele Distribution Models: Detecting Signatures of Selection in the Genome of Lake Victoria Cichlids

Chapter 18 Genomic Scan as a Tool for Assessing the Genetic Component of Phenotypic Variance in Wild Populations