Chapter 1 Functional Genomics, Proteomics, Metabolomics and Bioinformatics for Systems Biology

Chapter 2 Comparing Biological Networks: A Survey on Graph Classifying Techniques

Chapter 3 Emergent Properties of Gene Regulatory Networks: Models and Data

Chapter 4 Regulatory Crosstalk Analysis of Biochemical Networks in the Hippocampus and Nucleus Accumbens

Chapter 5 Properties of Biological Networks

Chapter 6 On Different Aspects of Network Analysis in Systems Biology

Chapter 7 Computational Approaches for Reconstruction of Time-Varying Biological Networks from Omics Data

Chapter 8 Probabilistic Graphical Modeling in Systems Biology: A Framework for Integrative Approaches

Chapter 9 Innovations of the Rule-Based Modeling Approach

Chapter 10 Reproducibility of Model-Based Results in Systems Biology

Chapter 11 Parameter Identifiability and Redundancy, with Applications to a General Class of Stochastic Carcinogenesis Models

Chapter 12 Semantic Systems Biology: Formal Knowledge Representation in Systems Biology for Model Construction, Retrieval, Validation and Discovery

Chapter 13 Computational Infrastructures for Data and Knowledge Management in Systems Biology

Chapter 14 Computational Tools and Resources for Integrative Modeling in Systems Biology

Chapter 15 Agent-Based Modeling Approaches to Multi-Scale Systems Biology: An Example Agent-Based Model of Acute Pulmonary Inflammation

Chapter 16 Reconstruction and Comparison of Cellular Signaling Pathway Resources for the Systems-Level Analysis of Cross-Talks

Chapter 17 A Survey of Current Integrative Network Algorithms for Systems Biology

Chapter 18 Direct Computer Mapping Based Modeling of a Multiscale Process Involving p53/miR-34a Signaling

Chapter 19 Erratum to: On Different Aspects of Network Analysis in Systems Biology