Chapter 1 Gene-Specific and Genome-Wide ChIP Approaches to Study Plant Transcriptional Networks

Chapter 2 Genome-Wide Analysis of RNA-Protein Interactions in Plants

Chapter 3 Whole-Genome Microarrays: Applications and Technical Issues

Chapter 4 Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment.

Chapter 5 Applications of ultra-high-throughput sequencing.

Chapter 6 Isolation of Plant Polysomal mRNA by Differential Centrifugation and Ribosome Immunopurification Methods

Chapter 7 Chromatin Charting: Global Mapping of Epigenetic Effects

Chapter 8 Clone-Based Functional Genomics

Chapter 9 Challenges and Approaches to Statistical Design and Inference in High-Dimensional Investigations

Chapter 10 Discrete Dynamic Modeling with Asynchronous Update, or How to Model Complex Systems in the Absence of Quantitative Information

Chapter 11 Quantification of Variation in Expression Networks

Chapter 12 Co-expression Analysis of Metabolic Pathways in Plants

Chapter 13 Integration of Metabolic Reactions and Gene Regulation

Chapter 14 Applying Word-Based Algorithms: The IMEter

Chapter 15 Live-Imaging and Image Processing of Shoot Apical Meristems of Arabidopsis thaliana

Chapter 16 Computer Vision as a Tool to Study Plant Development

Chapter 17 Metabolomics of Plant Volatiles

Chapter 18 Chemical Genomics Approaches in Plant Biology

Chapter 19 Comparison of Quantitative Metabolite Imaging Tools and Carbon-13 Techniques for Fluxomics

Chapter 20 Democratization and Integration of Genomic Profiling Tools