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Computational Methods in Protein Evolution

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Cover of 'Computational Methods in Protein Evolution'

Table of Contents

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    Book Overview
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    Chapter 1 Predicting the Effect of Mutations on Protein Folding and Protein-Protein Interactions
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    Chapter 2 Accurate Calculation of Free Energy Changes upon Amino Acid Mutation
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    Chapter 3 Protocols for the Molecular Evolutionary Analysis of Membrane Protein Gene Duplicates
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    Chapter 4 Computational Prediction of De Novo Emerged Protein-Coding Genes
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    Chapter 5 Coevolutionary Signals and Structure-Based Models for the Prediction of Protein Native Conformations
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    Chapter 6 Detecting Amino Acid Coevolution with Bayesian Graphical Models
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    Chapter 7 Context-Dependent Mutation Effects in Proteins
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    Chapter 8 High-Throughput Reconstruction of Ancestral Protein Sequence, Structure, and Molecular Function
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    Chapter 9 Ancestral Sequence Reconstruction as a Tool for the Elucidation of a Stepwise Evolutionary Adaptation
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    Chapter 10 Enhancing Statistical Multiple Sequence Alignment and Tree Inference Using Structural Information
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    Chapter 11 The Influence of Protein Stability on Sequence Evolution: Applications to Phylogenetic Inference
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    Chapter 12 Navigating Among Known Structures in Protein Space
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    Chapter 13 A Graph-Based Approach for Detecting Sequence Homology in Highly Diverged Repeat Protein Families
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    Chapter 14 Exploring Enzyme Evolution from Changes in Sequence, Structure, and Function
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    Chapter 15 Identification of Protein Homologs and Domain Boundaries by Iterative Sequence Alignment
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    Chapter 16 A Roadmap to Domain Based Proteomics
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    Chapter 17 Modeling of Protein Tertiary and Quaternary Structures Based on Evolutionary Information
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    Chapter 18 Interface-Based Structural Prediction of Novel Host-Pathogen Interactions
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    Chapter 19 Predicting Functions of Disordered Proteins with MoRFpred
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    Chapter 20 Exploring Protein Conformational Diversity
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    Chapter 21 High-Throughput Antibody Structure Modeling and Design Using ABodyBuilder
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    Chapter 22 In Silico-Directed Evolution Using CADEE
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