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RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods

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Cover of 'RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods'

Table of Contents

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    Book Overview
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    Chapter 1 Concepts and Introduction to RNA Bioinformatics
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    Chapter 2 The Principles of RNA Structure Architecture
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    Chapter 3 The Determination of RNA Folding Nearest Neighbor Parameters
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    Chapter 4 Energy-Directed RNA Structure Prediction
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    Chapter 5 Introduction to Stochastic Context Free Grammars
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    Chapter 6 An Introduction to RNA Databases
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    Chapter 7 Energy-Based RNA Consensus Secondary Structure Prediction in Multiple Sequence Alignments
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    Chapter 8 SCFGs in RNA Secondary Structure Prediction RNA secondary structure prediction : A Hands-on Approach
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    Chapter 9 Annotating Functional RNAs in Genomes Using Infernal
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    Chapter 10 Class-Specific Prediction of ncRNAs
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    Chapter 11 Abstract Shape Analysis of RNA
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    Chapter 12 Introduction to RNA Secondary Structure Comparison
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    Chapter 13 RNA Structural Alignments, Part I: Sankoff-Based Approaches for Structural Alignments
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    Chapter 14 RNA Structural Alignments, Part II: Non-Sankoff Approaches for Structural Alignments
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    Chapter 15 De Novo Discovery of Structured ncRNA Motifs in Genomic Sequences
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    Chapter 16 Phylogeny and Evolution of RNA Structure
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    Chapter 17 The Art of Editing RNA Structural Alignments
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    Chapter 18 Automated Modeling of RNA 3D Structure
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    Chapter 19 Computational Prediction of RNA–RNA Interactions
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    Chapter 20 Computational Prediction of MicroRNA Genes
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    Chapter 21 MicroRNA Target Finding by Comparative Genomics
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    Chapter 22 Bioinformatics of siRNA Design
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    Chapter 23 RNA–Protein Interactions: An Overview
Overall attention for this book and its chapters
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