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Algorithms for Computational Biology

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Cover of 'Algorithms for Computational Biology'

Table of Contents

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    Book Overview
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    Chapter 1 The Trees in the Peaks
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    Chapter 2 Relating Bisimulations with Attractors in Boolean Network Models
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    Chapter 3 Neural Networks Simulation of Feeding Adaptations of Daphnia
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    Chapter 4 Generating the Logicome of a Biological Network
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    Chapter 5 Counting, Generating and Sampling Tree Alignments
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    Chapter 6 A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy
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    Chapter 7 Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-optimal Solutions
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    Chapter 8 Accumulated Coalescence Rank and Excess Gene Count for Species Tree Inference
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    Chapter 9 Bootstrapping Algorithms for Gene Duplication and Speciation Events
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    Chapter 10 Robustness of the Parsimonious Reconciliation Method in Cophylogeny
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    Chapter 11 Sorting with Forbidden Intermediates
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    Chapter 12 Evaluation and Improvement of Fast Algorithms for Exact Matching on Genome Sequences
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    Chapter 13 Identification of Variant Compositions in Related Strains Without Reference
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    Chapter 14 New Error Tolerant Method for Search of Long Repeats in DNA Sequences
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