Title |
Inclusion of Gene-Gene and Gene-Environment Interactions Unlikely to Dramatically Improve Risk Prediction for Complex Diseases
|
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Published in |
American Journal of Human Genetics, May 2012
|
DOI | 10.1016/j.ajhg.2012.04.017 |
Pubmed ID | |
Authors |
Hugues Aschard, Jinbo Chen, Marilyn C. Cornelis, Lori B. Chibnik, Elizabeth W. Karlson, Peter Kraft |
Abstract |
Genome-wide association studies have identified hundreds of common genetic variants associated with the risk of multifactorial diseases. However, their impact on discrimination and risk prediction is limited. It has been suggested that the identification of gene-gene (G-G) and gene-environment (G-E) interactions would improve disease prediction and facilitate prevention. We conducted a simulation study to explore the potential improvement in discrimination if G-G and G-E interactions exist and are known. We used three diseases (breast cancer, type 2 diabetes, and rheumatoid arthritis) as motivating examples. We show that the inclusion of G-G and G-E interaction effects in risk-prediction models is unlikely to dramatically improve the discrimination ability of these models. |
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Switzerland | 1 | 8% |
United Kingdom | 1 | 8% |
Unknown | 3 | 23% |
Demographic breakdown
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Scientists | 7 | 54% |
Members of the public | 3 | 23% |
Practitioners (doctors, other healthcare professionals) | 2 | 15% |
Science communicators (journalists, bloggers, editors) | 1 | 8% |
Mendeley readers
Geographical breakdown
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United States | 5 | 3% |
Netherlands | 2 | 1% |
Hong Kong | 1 | <1% |
Canada | 1 | <1% |
United Kingdom | 1 | <1% |
Thailand | 1 | <1% |
Luxembourg | 1 | <1% |
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Demographic breakdown
Readers by professional status | Count | As % |
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Researcher | 32 | 22% |
Student > Ph. D. Student | 31 | 22% |
Student > Master | 19 | 13% |
Professor | 11 | 8% |
Student > Doctoral Student | 9 | 6% |
Other | 31 | 22% |
Unknown | 10 | 7% |
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Medicine and Dentistry | 41 | 29% |
Biochemistry, Genetics and Molecular Biology | 13 | 9% |
Computer Science | 6 | 4% |
Mathematics | 6 | 4% |
Other | 21 | 15% |
Unknown | 15 | 10% |