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Transposons and Retrotransposons

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Cover of 'Transposons and Retrotransposons'

Table of Contents

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    Book Overview
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    Chapter 1 Study of Transposable Elements and Their Genomic Impact
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    Chapter 2 Bacterial Group II Introns: Identification and Mobility Assay.
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    Chapter 3 In Silico Methods to Identify Exapted Transposable Element Families. - PubMed - NCBI
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    Chapter 4 Retrotransposon Capture Sequencing (RC-Seq): A Targeted, High-Throughput Approach to Resolve Somatic L1 Retrotransposition in Humans
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    Chapter 5 Long Interspersed Element Sequencing (L1-Seq): A Method to Identify Somatic LINE-1 Insertions in the Human Genome
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    Chapter 6 Combining Amplification Typing of L1 Active Subfamilies (ATLAS) with High-Throughput Sequencing
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    Chapter 7 RNA-Seq Analysis to Measure the Expression of SINE Retroelements
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    Chapter 8 Qualitative and Quantitative Assays of Transposition and Homologous Recombination of the Retrotransposon Tf1 in Schizosaccharomyces pombe
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    Chapter 9 LINE Retrotransposition Assays in Saccharomyces cerevisiae
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    Chapter 10 LINE-1 Cultured Cell Retrotransposition Assay.
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    Chapter 11 L1 Retrotransposition in Neural Progenitor Cells. - PubMed - NCBI
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    Chapter 12 Characterization of Engineered L1 Retrotransposition Events: The Recovery Method
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    Chapter 13 SINE Retrotransposition: Evaluation of Alu Activity and Recovery of De Novo Inserts.
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    Chapter 14 The Engineered SVA Trans-mobilization Assay.
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    Chapter 15 Detection of LINE-1 RNAs by Northern Blot. - PubMed - NCBI
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    Chapter 16 Monitoring Long Interspersed Nuclear Element 1 Expression During Mouse Embryonic Stem Cell Differentiation
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    Chapter 17 Immunodetection of Human LINE-1 Expression in Cultured Cells and Human Tissues.
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    Chapter 18 Cellular Localization of Engineered Human LINE-1 RNA and Proteins.
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    Chapter 19 Purification of L1-Ribonucleoprotein Particles (L1-RNPs) from Cultured Human Cells
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    Chapter 20 Characterization of L1-Ribonucleoprotein Particles.
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    Chapter 21 LEAP: L1 Element Amplification Protocol
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    Chapter 22 Biochemical Approaches to Study LINE-1 Reverse Transcriptase Activity In Vitro.
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    Chapter 23 Methylated DNA Immunoprecipitation Analysis of Mammalian Endogenous Retroviruses
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    Chapter 24 Profiling DNA Methylation and Hydroxymethylation at Retrotransposable Elements
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    Chapter 25 A Large-Scale Functional Screen to Identify Epigenetic Repressors of Retrotransposon Expression
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    Chapter 26 Reprogramming of Human Fibroblasts to Induced Pluripotent Stem Cells with Sleeping Beauty Transposon-Based Stable Gene Delivery
Attention for Chapter 18: Cellular Localization of Engineered Human LINE-1 RNA and Proteins.
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Chapter title
Cellular Localization of Engineered Human LINE-1 RNA and Proteins.
Chapter number 18
Book title
Transposons and Retrotransposons
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3372-3_18
Pubmed ID
Book ISBNs
978-1-4939-3370-9, 978-1-4939-3372-3
Authors

Aurélien J. Doucet, Eugénia Basyuk, Nicolas Gilbert

Editors

Jose L. Garcia-Pérez

Abstract

The human LINE-1 retrotransposon has the ability to mobilize into a new genomic location through an intracellular replication cycle. Immunofluorescence and in situ hybridization experiments have been developed to detect subcellular localization of retrotransposition intermediates (i.e., ORF1p, ORF2p, and L1 mRNA). Currently, these protocols are also used to validate the interaction between retrotransposition complex components and potential cellular partners involved in L1 replication. Here, we describe in details methods for the identification of LINE-1 proteins and/or RNA in cells transfected with vectors expressing engineered human LINE-1 elements.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 9 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Hungary 1 11%
Unknown 8 89%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 3 33%
Student > Master 2 22%
Researcher 2 22%
Professor 1 11%
Professor > Associate Professor 1 11%
Other 0 0%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 4 44%
Agricultural and Biological Sciences 2 22%
Economics, Econometrics and Finance 1 11%
Medicine and Dentistry 1 11%
Neuroscience 1 11%
Other 0 0%