A systematic analyses of different bioinformatics pipelines for genomic data and its impact on deep learning models for chromatin loop prediction
Article in Briefings in Functional Genomics (March 2024)
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3D Enhancer–promoter networks provide predictive features for gene expression and coregulation in early embryonic lineages
Article in Nature Structural & Molecular Biology (December 2023)
Connecting Chromatin Structures to Gene Regulation Using Dynamic Polymer Simulations
Preprint in bioRxiv (November 2023)