Interesting set of corresponding articles from last year comparing RNA-seq deconvolution methods TIMER (https://t.co/saKHDgvAuA) and CIBERSORT (https://t.co/wnIkMP3PL0) with best practices for benchmarking (https://t.co/HnZTeZGvYj)
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RT @iskander: Important distinction between CIBERSORT and TIMER when trying to quantifying immune infiltrate from bulk tumor RNA-seq: CIBER…
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Important distinction between CIBERSORT and TIMER when trying to quantifying immune infiltrate from bulk tumor RNA-seq: CIBERSORT predicts fraction of leukocytes for each category, TIMER gives fraction of all cells in tumor sample. (reading back & for
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@marc_rr This manuscript also reports problems with CIBERSORT due to correlation in expression profiles https://t.co/9XpjdILs5m