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Bioinformatics of Genome Regulation and Structure II

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Cover of 'Bioinformatics of Genome Regulation and Structure II'

Table of Contents

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    Book Overview
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    Chapter 1 Recognition of Coding Regions in Genome Alignment
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    Chapter 2 Predicting sRNA Genes in the Genome of E. Coli by the Promoter-Search Algorithm PlatProm
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    Chapter 3 Content Sensors Based on Codon Structure and DNA Methylation for Gene Finding in Vertebrate Genomes
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    Chapter 4 The Sitega Tool for Recognition and Context Analysis of Transcription Factor Binding Sites: Significant Dinucleotide Features Besides the Canonical Consensus Exemplified By SF-1 Binding Site
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    Chapter 5 Transcription Regulatory Regions Database (TRRD): A Source of Experimentally Confirmed Data on Transcription Regulatory Regions of Eukaryotic Genes
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    Chapter 6 Artsite Database: Comparison of In Vitro Selected and Natural Binding Sites of Eukaryotic Transcription Factors
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    Chapter 7 Comparative Analysis of Electrostatic Patterns for Promoter and Nonpromoter DNA in E. Coli Genome
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    Chapter 8 Analysis of Nucleosome Formation Potential and Conformational Properties of Human J1-J2 and D2-D1 Type Alpha Satellite DNA
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    Chapter 9 VMM: A Variable Memory Markov Model Prediction of Nucleosome Formation Sites
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    Chapter 10 DNA Nucleosome Organization of the Promoter Gene Regions
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    Chapter 11 A Toolbox for Analysis of RNA Secondary Structure Based on Genetic Algorithm
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    Chapter 12 Comparative Genomics and Evolution of Bacterial Regulatory Systems
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    Chapter 13 Comparative Whole Genome Sequence Analysis of Corynebacteria
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    Chapter 14 New LTR Retrotransposable Elements from Eukaryotic Genomes
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    Chapter 15 A Genome-Wide Identification of Mitochondrial DNA Topoisomerase I in Arabidopsis
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    Chapter 16 Change in CpG Context is a Leading Cause of Correlation between the Rates of Non-Synonymous and Synonymous Substitutions in Rodents
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    Chapter 17 Universal Seven-Cluster Structure of Genome Fragment Distribution: Basic Symmetry in Triplet Frequencies
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    Chapter 18 New Methods to Infer DNA Function from Sequence Information
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    Chapter 19 Revelation and Classification of Dinucleotide Periodicity of Bacterial Genomes Using the Method of Information Decomposition
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    Chapter 20 Algorithms to Reconstruct Evolutionary Events at Molecular Level and Infer Species Phylogeny
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    Chapter 21 Mining from Complete Proteomes to Identify Adhesins and Adhesin-Like Proteins: A Rapid Aid to Experimental Researchers
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    Chapter 22 Central Moments Based Statistical Analysis for the Determination of Functional Sites in Proteins with Thematics
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    Chapter 23 Amino Acids Surface Patterns in Protein Domain Functionality Analysis
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    Chapter 24 Computer Simulations of Anionic Unsaturated Lipid Bilayer—A Suitable Model to Study Membrane Interactions with A Cell-Penetrating Peptide
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    Chapter 25 The Role of Water in Homeodomain-DNA Interaction
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    Chapter 26 Molecular Modeling of Human MT 1 and MT 2 Melatonin Receptors
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    Chapter 27 Molecular Dynamics of Small Peptides Using Ergodic Trajectories
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    Chapter 28 A Periodical Nature of 94 Protein Families
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    Chapter 29 Prediction of Contact Numbers of Amino Acid Residues Using a Neural Network Model
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    Chapter 30 Fastprot: A Computational Workbench for Recognition of the Structural and Functional Determinants in Protein Tertiary Structures
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    Chapter 31 A Markov Model for Protein Sequences
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    Chapter 32 Proteome Complexity Measures Based on Counting of Domain-to-Protein Links for Replicative and Non-Replicative Domains
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    Chapter 33 A Software Architecture for Developmental Modeling in Plants: The Computable Plant Project
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    Chapter 34 Prediction and Alignment of Metabolic Pathways
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    Chapter 35 General Principles of Organization and Laws of Functioning in Governing Gene Networks
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    Chapter 36 From Gradients to Stripes: A Logical Analysis of Drosophila Segmentation Genetic Network
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    Chapter 37 Self-Oscillations in Hypothetical Gene Networks
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    Chapter 38 Periodic Trajectories and Andronov-Hopf Bifurcations in Models of Gene Networks
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    Chapter 39 On the Problem of Search for Stationary Points in Regulatory Circuits of Gene Networks
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    Chapter 40 Modeling of Gene Expression by the Delay Equation
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    Chapter 41 AGNS—A Database on Expression of Arabidopsis Genes
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    Chapter 42 Study of the Interactions between Viral and Human Genomes During Transformation of B Cells with Epstein-Barr Virus
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    Chapter 43 Probing Gene Expression: Sequence-Specific Hybridization on Microarrays
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    Chapter 44 Determination of the Developmental Age of a Drosophila Embryo from Confocal Images of its Segmentation Gene Expression Patterns
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    Chapter 45 Topical Clustering of Biomedical Abstracts by Self-Organizing Maps
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    Chapter 46 Software for Analysis of Gene Regulatory Sequences by Knowledge Discovery Methods
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    Chapter 47 A Mathematical Model of the Discontinuous Genetic Structures Fixation Process
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Bioinformatics of Genome Regulation and Structure II
Published by
Springer US, November 2005
DOI 10.1007/0-387-29455-4
978-0-387-29450-6, 978-1-4614-9770-7, 978-0-387-29455-1

Kolchanov, Nikolay, Hofestaedt, Ralf, Milanesi, Luciano

Mendeley readers

The data shown below were compiled from readership statistics for 4 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 4 100%

Demographic breakdown

Readers by professional status Count As %
Professor > Associate Professor 1 25%
Researcher 1 25%
Unknown 2 50%
Readers by discipline Count As %
Mathematics 1 25%
Agricultural and Biological Sciences 1 25%
Unknown 2 50%