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Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Overview of attention for article published in PLOS ONE, December 2009
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (83rd percentile)
  • Good Attention Score compared to outputs of the same age and source (66th percentile)

Mentioned by

twitter
1 X user
patent
3 patents

Citations

dimensions_citation
178 Dimensions

Readers on

mendeley
458 Mendeley
citeulike
29 CiteULike
connotea
1 Connotea
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Title
Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler
Published in
PLOS ONE, December 2009
DOI 10.1371/journal.pone.0008407
Pubmed ID
Authors

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

Abstract

Despite the short length of their reads, micro-read sequencing technologies have shown their usefulness for de novo sequencing. However, especially in eukaryotic genomes, complex repeat patterns are an obstacle to large assemblies.

X Demographics

X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 458 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 19 4%
United Kingdom 12 3%
Germany 7 2%
Netherlands 4 <1%
Norway 4 <1%
Brazil 3 <1%
Spain 3 <1%
Sweden 3 <1%
Australia 2 <1%
Other 20 4%
Unknown 381 83%

Demographic breakdown

Readers by professional status Count As %
Researcher 117 26%
Student > Ph. D. Student 114 25%
Student > Master 58 13%
Other 26 6%
Professor > Associate Professor 24 5%
Other 89 19%
Unknown 30 7%
Readers by discipline Count As %
Agricultural and Biological Sciences 266 58%
Computer Science 63 14%
Biochemistry, Genetics and Molecular Biology 47 10%
Mathematics 8 2%
Environmental Science 7 2%
Other 30 7%
Unknown 37 8%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 7. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 13 April 2018.
All research outputs
#4,480,576
of 22,649,029 outputs
Outputs from PLOS ONE
#61,166
of 193,361 outputs
Outputs of similar age
#25,942
of 163,734 outputs
Outputs of similar age from PLOS ONE
#199
of 608 outputs
Altmetric has tracked 22,649,029 research outputs across all sources so far. Compared to these this one has done well and is in the 80th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 193,361 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 15.0. This one has gotten more attention than average, scoring higher than 68% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 163,734 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 83% of its contemporaries.
We're also able to compare this research output to 608 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 66% of its contemporaries.