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Brachypodium Genomics

Overview of attention for book
Cover of 'Brachypodium Genomics'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Methods for Cytogenetic Chromosome Barcoding and Chromosome Painting in Brachypodium distachyon and Its Relative Species
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    Chapter 2 Transcriptional and Posttranscriptional Regulation of Drought Stress Treatments in Brachypodium Leaves
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    Chapter 3 Brachypodium distachyon Long Noncoding RNAs: Genome-Wide Identification and Expression Analysis
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    Chapter 4 A Highly Efficient and Reproducible Fusarium spp. Inoculation Method for Brachypodium distachyon
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    Chapter 5 Tissue Culture (Somatic Embryogenesis)-Induced Tnt1 Retrotransposon-Based Mutagenesis in Brachypodium distachyon
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    Chapter 6 Methods for Xyloglucan Structure Analysis in Brachypodium distachyon
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    Chapter 7 Genomic Approaches to Analyze Alternative Splicing, A Key Regulator of Transcriptome and Proteome Diversity in Brachypodium distachyon
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    Chapter 8 Information Resources for Functional Genomics Studies in Brachypodium distachyon
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    Chapter 9 Methods for Functional Transgenics: Development of Highly Efficient Transformation Protocol in Brachypodium and Its Suitability for Advancing Brachypodium Transgenics
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    Chapter 10 Molecular Markers in Whole Genome Evolution of Brachypodium
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    Chapter 11 Estimate Codon Usage Bias Using Codon Usage Analyzer (CUA)
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    Chapter 12 Identification of Pseudogenes in Brachypodium distachyon Chromosomes
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    Chapter 13 TILLING in Brachypodium distachyon
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    Chapter 14 Method for the Large-Scale Identification of phasiRNAs in Brachypodium distachyon
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    Chapter 15 Evaluation of Genome-Wide Markers and Orthologous Markers in Brachypodium distachyon
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    Chapter 16 Protocol for Coexpression Network Construction and Stress-Responsive Expression Analysis in Brachypodium
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    Chapter 17 Whole Genome DNA Methylation Analysis Using Next-Generation Sequencing (BS-seq)
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    Chapter 18 Application of Tissue Culture and Transformation Techniques in Model Species Brachypodium distachyon
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    Chapter 19 Erratum to: Whole Genome DNA Methylation Analysis of Brachypodium distachyon Using Next-Generation Sequencing (BS-seq)
Attention for Chapter 7: Genomic Approaches to Analyze Alternative Splicing, A Key Regulator of Transcriptome and Proteome Diversity in Brachypodium distachyon
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About this Attention Score

  • Above-average Attention Score compared to outputs of the same age (52nd percentile)
  • Good Attention Score compared to outputs of the same age and source (79th percentile)

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Chapter title
Genomic Approaches to Analyze Alternative Splicing, A Key Regulator of Transcriptome and Proteome Diversity in Brachypodium distachyon
Chapter number 7
Book title
Brachypodium Genomics
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7278-4_7
Pubmed ID
29039005
Book ISBNs
978-1-4939-7276-0, 978-1-4939-7278-4
Authors

Sonia Irigoyen, Renesh H. Bedre, Karen-Beth G. Scholthof, Kranthi K. Mandadi, Irigoyen, Sonia, Bedre, Renesh H., Scholthof, Karen-Beth G., Mandadi, Kranthi K.

Abstract

Alternative splicing (AS) promotes transcriptome and proteome diversity in plants, which influences growth and development, and host responses to stress. Advancements in next-generation sequencing, bioinformatics, and computational biology tools have allowed biologists to investigate AS landscapes on a genome-wide scale in several plant species. Furthermore, the development of Brachypodium distachyon (Brachypodium) as a model system for grasses has facilitated comparative studies of AS within the Poaceae. These analyses revealed a plethora of genes in several biological processes that are alternatively spliced and identified conserved AS patterns among monocot and dicot plants. In this chapter, using a Brachypodium-virus pathosystem as a research template, we provide an overview of genomic and bioinformatic tools that can be used to investigate constitutive and alternative splicing in plants.

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X Demographics

X Demographics

The data shown below were collected from the profiles of 3 X users who shared this research output. Click here to find out more about how the information was compiled.
 Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 6 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 6 100%

Demographic breakdown

Readers by professional status Count As %
Student > Doctoral Student 2 33%
Student > Ph. D. Student 1 17%
Other 1 17%
Professor > Associate Professor 1 17%
Unknown 1 17%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 3 50%
Computer Science 1 17%
Agricultural and Biological Sciences 1 17%
Unknown 1 17%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 05 June 2018.
All research outputs
#13,056,998
of 23,006,268 outputs
Outputs from Methods in molecular biology
#3,317
of 13,160 outputs
Outputs of similar age
#207,128
of 442,254 outputs
Outputs of similar age from Methods in molecular biology
#283
of 1,498 outputs
Altmetric has tracked 23,006,268 research outputs across all sources so far. This one is in the 42nd percentile – i.e., 42% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,160 research outputs from this source. They receive a mean Attention Score of 3.4. This one has gotten more attention than average, scoring higher than 73% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 442,254 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 52% of its contemporaries.
We're also able to compare this research output to 1,498 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 79% of its contemporaries.

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