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Plant Membrane Proteomics

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Cover of 'Plant Membrane Proteomics'

Table of Contents

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    Book Overview
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    Chapter 1 Free Flow Zonal Electrophoresis for Fractionation of Plant Membrane Compartments Prior to Proteomic Analysis
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    Chapter 2 Isolation and Purity Assessment of Membranes from Norway Spruce
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    Chapter 3 Nuclear Proteome: Isolation of Intact Nuclei, Extraction of Nuclear Proteins, and 2-DE Analysis
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    Chapter 4 Identification of Plant Nuclear Proteins Based on a Combination of Flow Sorting, SDS-PAGE, and LC-MS/MS Analysis
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    Chapter 5 Isolation, Purity Assessment, and Proteomic Analysis of Nuclei
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    Chapter 6 Proteomic Analysis of Rice Golgi Membranes Isolated by Floating Through Discontinuous Sucrose Density Gradient
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    Chapter 7 Analyzing the Vacuolar Membrane (Tonoplast) Proteome
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    Chapter 8 Preparation of Membrane Fractions (Envelope, Thylakoids, Grana, and Stroma Lamellae) from Arabidopsis Chloroplasts for Quantitative Proteomic Investigations and Other Studies
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    Chapter 9 Isolation of Intact Thylakoid Membranes from Heterocysts of Filamentous, Nitrogen-Fixing Cyanobacteria
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    Chapter 10 Targeted Quantification of Isoforms of a Thylakoid-Bound Protein: MRM Method Development
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    Chapter 11 Sample Preparation for Analysis of the Plant Mitochondrial Membrane Proteome
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    Chapter 12 Plasma Membrane Proteomics of Arabidopsis Suspension-Cultured Cells Associated with Growth Phase Using Nano-LC-MS/MS
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    Chapter 13 Mini-Scale Isolation and Preparation of Plasma Membrane Proteins from Potato Roots for LC/MS Analysis
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    Chapter 14 Assay of Plasma Membrane H+-ATPase in Plant Tissues under Abiotic Stresses
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    Chapter 15 Absolute Quantitation of In Vitro Expressed Plant Membrane Proteins by Targeted Proteomics (MRM) for the Determination of Kinetic Parameters
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    Chapter 16 MSE for Label-Free Absolute Protein Quantification in Complex Proteomes
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    Chapter 17 Identification and Characterization of Plant Membrane Proteins Using ARAMEMNON
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    Chapter 18 VANTED: A Tool for Integrative Visualization and Analysis of -Omics Data
Attention for Chapter 3: Nuclear Proteome: Isolation of Intact Nuclei, Extraction of Nuclear Proteins, and 2-DE Analysis
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Chapter title
Nuclear Proteome: Isolation of Intact Nuclei, Extraction of Nuclear Proteins, and 2-DE Analysis
Chapter number 3
Book title
Plant Membrane Proteomics
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7411-5_3
Pubmed ID
Book ISBNs
978-1-4939-7409-2, 978-1-4939-7411-5
Authors

Aarti Pandey, Subhra Chakraborty, Niranjan Chakraborty

Abstract

Proteome profiling aims to unravel the mystery of biological complexity encoded by the genome. The successful proteome profiling largely depends upon analytical approaches because single-step proteome characterization of eukaryotic cells is difficult due to the large number of proteins expressed and their complex physiochemical properties. Organellar proteomics helps in identifying a refined set of proteins by pinpointing certain activities to specific organelles, thereby increasing our knowledge of cellular processes. The reliability of a plant organelle proteome is intimately dependent on the purity of the organelle preparation. Methodological improvements in sample handling, organelle fractionation, and protein extraction are therefore crucial to plant subcellular proteomics. The nuclear proteins are organized into complex regulatory networks and perform varied cellular functions. Therefore, characterization of the nuclear proteome is an important step toward accumulating knowledge about regulation of gene expression and function. In this chapter, we present methods for the isolation of nuclei, purification of nuclear proteins, and proteome profiling that have been adapted for proteomic characterization of economically important crop species, such as chickpea.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 10 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 10 100%

Demographic breakdown

Readers by professional status Count As %
Student > Doctoral Student 2 20%
Other 1 10%
Student > Ph. D. Student 1 10%
Unknown 6 60%
Readers by discipline Count As %
Agricultural and Biological Sciences 1 10%
Materials Science 1 10%
Engineering 1 10%
Unknown 7 70%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 01 November 2017.
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#18,575,277
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Outputs from Methods in molecular biology
#7,962
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#330,463
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Outputs of similar age from Methods in molecular biology
#950
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