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Genomics Protocols

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Cover of 'Genomics Protocols'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Whole genome amplification with Phi29 DNA polymerase to enable genetic or genomic analysis of samples of low DNA yield.
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    Chapter 2 Scanning for DNA Variants by Denaturant Capillary Electrophoresis
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    Chapter 3 Identification of SNPs, or Mutations in Sequence Chromatograms
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    Chapter 4 BeadArray-Based Genotyping
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    Chapter 5 Microsatellite-Based Candidate Gene Linkage Analysis Studies
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    Chapter 6 Full Complexity Genomic Hybridization on 60-mer Oligonucleotide Microarrays for Array Comparative Genomic Hybridization (aCGH)
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    Chapter 7 Detection of Copy Number Changes at Multiple Loci in DNA Prepared from Formalin-Fixed, Paraffin-Embedded Tissue by Multiplex Ligation-Dependent Probe Amplification
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    Chapter 8 Application of Microarrays for DNA Methylation Profiling
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    Chapter 9 Genomewide Identification of Protein Binding Locations Using Chromatin Immunoprecipitation Coupled with Microarray
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    Chapter 10 Transcriptional Profiling of Small Samples in the Central Nervous System
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    Chapter 11 Quantitative Expression Profiling of RNA from Formalin-Fixed, Paraffin-Embedded Tissues Using Randomly Assembled Bead Arrays
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    Chapter 12 Expression Profiling of microRNAs in Cancer Cells: Technical Considerations
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    Chapter 13 Identification of Disease Biomarkers by Profiling of Serum Proteins Using SELDI-TOF Mass Spectrometry
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    Chapter 14 The Applicability of a Cluster of Differentiation Monoclonal Antibody Microarray to the Diagnosis of Human Disease
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    Chapter 15 Protein Profiling Based on Two-Dimensional Difference Gel Electrophoresis
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    Chapter 16 Quantitative Protein Profiling by Mass Spectrometry Using Isotope-Coded Affinity Tags
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    Chapter 17 Quantitative protein profiling by mass spectrometry using label-free proteomics.
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    Chapter 18 Using 2D-LC-MS/MS to Identify Francisella tularensis Peptides in Extracts from an Infected Mouse Macrophage Cell Line
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    Chapter 19 Baculovirus Expression Vector System: An Emerging Host for High-Throughput Eukaryotic Protein Expression
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    Chapter 20 Coimmunoprecipitation and Proteomic Analyses
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    Chapter 21 Tandem Affinity Purification Combined with Mass Spectrometry to Identify Components of Protein Complexes
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    Chapter 22 Mammalian Two-Hybrid Assay for Detecting Protein-Protein Interactions in Vivo
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    Chapter 23 Detection of protein-protein interactions in live cells and animals with split firefly luciferase protein fragment complementation.
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    Chapter 24 Subcellular Localization of Intracellular Human Proteins by Construction of Tagged Fusion Proteins and Transient Expression in COS-7 Cells
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    Chapter 25 GeneFAS: GeneFAS: A Tool for the Prediction of Gene function Using Multiple Sources of Data
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    Chapter 26 Comparative Genomics-Based Prediction of Protein Function
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    Chapter 27 Design, Manufacture, and Assay of the Efficacy of siRNAs for Gene Silencing
Attention for Chapter 23: Detection of protein-protein interactions in live cells and animals with split firefly luciferase protein fragment complementation.
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Chapter title
Detection of protein-protein interactions in live cells and animals with split firefly luciferase protein fragment complementation.
Chapter number 23
Book title
Genomics Protocols
Published in
Methods in molecular biology, January 2008
DOI 10.1007/978-1-59745-188-8_23
Pubmed ID
Book ISBNs
978-1-58829-871-3, 978-1-59745-188-8
Authors

Victor Villalobos, Snehal Naik, David Piwnica-Worms, Villalobos, Victor, Naik, Snehal, Piwnica-Worms, David

Abstract

Protein fragment complementation has emerged as a powerful tool for measuring protein-protein interactions in the context of live cells. The adaptation of this strategy for use with firefly luciferase now allows for the non-invasive, quantitative, real-time readout of protein interactions in lysates, live cells, and whole animals. Bioluminescence provides a robust imaging modality due to its extremely low background signal and large dynamic range. The split luciferase fusion constructs described here are inducible by addition of ligands, small molecules or drugs, in this example, rapamycin, and have been shown to work in vivo.

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X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 56 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
France 2 4%
United States 2 4%
Malaysia 1 2%
United Kingdom 1 2%
Unknown 50 89%

Demographic breakdown

Readers by professional status Count As %
Researcher 14 25%
Student > Ph. D. Student 13 23%
Other 7 13%
Student > Master 4 7%
Student > Bachelor 3 5%
Other 11 20%
Unknown 4 7%
Readers by discipline Count As %
Agricultural and Biological Sciences 30 54%
Biochemistry, Genetics and Molecular Biology 6 11%
Medicine and Dentistry 5 9%
Unspecified 2 4%
Engineering 2 4%
Other 8 14%
Unknown 3 5%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 16 October 2013.
All research outputs
#18,351,676
of 22,727,570 outputs
Outputs from Methods in molecular biology
#7,858
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Outputs of similar age
#146,655
of 155,968 outputs
Outputs of similar age from Methods in molecular biology
#72
of 87 outputs
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