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Next Generation Microarray Bioinformatics

Overview of attention for book
Cover of 'Next Generation Microarray Bioinformatics'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 A Primer on the Current State of Microarray Technologies
  3. Altmetric Badge
    Chapter 2 The KEGG Databases and Tools Facilitating Omics Analysis: Latest Developments Involving Human Diseases and Pharmaceuticals.
  4. Altmetric Badge
    Chapter 3 Next Generation Microarray Bioinformatics
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    Chapter 4 Analyzing Cancer Samples with SNP Arrays
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    Chapter 5 Classification Approaches for Microarray Gene Expression Data Analysis
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    Chapter 6 Biclustering of time series microarray data.
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    Chapter 7 Using the Bioconductor GeneAnswers Package to Interpret Gene Lists
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    Chapter 8 Analysis of Isoform Expression from Splicing Array Using Multiple Comparisons
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    Chapter 9 Functional Comparison of Microarray Data Across Multiple Platforms Using the Method of Percentage of Overlapping Functions
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    Chapter 10 Performance Comparison of Multiple Microarray Platforms for Gene Expression Profiling
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    Chapter 11 Integrative Approaches for Microarray Data Analysis
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    Chapter 12 Modeling Gene Regulation Networks Using Ordinary Differential Equations
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    Chapter 13 Nonhomogeneous Dynamic Bayesian Networks in Systems Biology
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    Chapter 14 Inference of Regulatory Networks from Microarray Data with R and the Bioconductor Package qpgraph
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    Chapter 15 Effective Non-linear Methods for Inferring Genetic Regulation from Time-Series Microarray Gene Expression Data
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    Chapter 16 An overview of the analysis of next generation sequencing data.
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    Chapter 17 How to Analyze Gene Expression Using RNA-Sequencing Data
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    Chapter 18 Analyzing ChIP-seq Data: Preprocessing, Normalization, Differential Identification, and Binding Pattern Characterization.
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    Chapter 19 Identifying Differential Histone Modification Sites from ChIP‐seq Data
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    Chapter 20 ChIP-Seq Data Analysis: Identification of Protein–DNA Binding Sites with SISSRs Peak-Finder
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    Chapter 21 Using ChIPMotifs for De Novo Motif Discovery of OCT4 and ZNF263 Based on ChIP-Based High-Throughput Experiments.
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    Chapter 22 Hidden Markov Models for Controlling False Discovery Rate in Genome-Wide Association Analysis
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    Chapter 23 Employing Gene Set Top Scoring Pairs to Identify Deregulated Pathway-Signatures in Dilated Cardiomyopathy from Integrated Microarray Gene Expression Data
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    Chapter 24 JAMIE: A Software Tool for Jointly Analyzing Multiple ChIP-chip Experiments
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    Chapter 25 Epigenetic Analysis: ChIP-chip and ChIP-seq
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    Chapter 26 BiNGS!SL-seq: A Bioinformatics Pipeline for the Analysis and Interpretation of Deep Sequencing Genome-Wide Synthetic Lethal Screen.
Attention for Chapter 2: The KEGG Databases and Tools Facilitating Omics Analysis: Latest Developments Involving Human Diseases and Pharmaceuticals.
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Chapter title
The KEGG Databases and Tools Facilitating Omics Analysis: Latest Developments Involving Human Diseases and Pharmaceuticals.
Chapter number 2
Book title
Next Generation Microarray Bioinformatics
Published in
Methods in molecular biology, January 2012
DOI 10.1007/978-1-61779-400-1_2
Pubmed ID
Book ISBNs
978-1-61779-399-8, 978-1-61779-400-1
Authors

Masaaki Kotera, Mika Hirakawa, Toshiaki Tokimatsu, Susumu Goto, Minoru Kanehisa, Kotera, Masaaki, Hirakawa, Mika, Tokimatsu, Toshiaki, Goto, Susumu, Kanehisa, Minoru

Abstract

In this chapter, we demonstrate the usability of the KEGG (Kyoto encyclopedia of genes and genomes) databases and tools, especially focusing on the visualization of the omics data. The desktop application KegArray and many Web-based tools are tightly integrated with the KEGG knowledgebase, which helps visualize and interpret large amount of data derived from high-throughput measurement techniques including microarray, metagenome, and metabolome analyses. Recently developed resources for human disease, drug, and plant research are also mentioned.

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X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 73 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 1 1%
Netherlands 1 1%
Italy 1 1%
Spain 1 1%
Japan 1 1%
United States 1 1%
Unknown 67 92%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 19 26%
Researcher 15 21%
Professor > Associate Professor 5 7%
Student > Master 4 5%
Professor 3 4%
Other 11 15%
Unknown 16 22%
Readers by discipline Count As %
Agricultural and Biological Sciences 26 36%
Medicine and Dentistry 8 11%
Biochemistry, Genetics and Molecular Biology 8 11%
Computer Science 4 5%
Engineering 4 5%
Other 7 10%
Unknown 16 22%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 02 December 2011.
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#20,152,153
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Outputs from Methods in molecular biology
#9,797
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#221,131
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Outputs of similar age from Methods in molecular biology
#423
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We're also able to compare this research output to 473 others from the same source and published within six weeks on either side of this one. This one is in the 1st percentile – i.e., 1% of its contemporaries scored the same or lower than it.