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The vocabulary of microbiome research: a proposal

Overview of attention for article published in Microbiome, July 2015
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  • In the top 5% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (99th percentile)
  • High Attention Score compared to outputs of the same age and source (93rd percentile)

Citations

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812 Dimensions

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2185 Mendeley
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Title
The vocabulary of microbiome research: a proposal
Published in
Microbiome, July 2015
DOI 10.1186/s40168-015-0094-5
Pubmed ID
Authors

Julian R. Marchesi, Jacques Ravel

Abstract

The advancement of DNA/RNA, proteins, and metabolite analytical platforms, combined with increased computing technologies, has transformed the field of microbial community analysis. This transformation is evident by the exponential increase in the number of publications describing the composition and structure, and sometimes function, of the microbial communities inhabiting the human body. This rapid evolution of the field has been accompanied by confusion in the vocabulary used to describe different aspects of these communities and their environments. The misuse of terms such as microbiome, microbiota, metabolomic, and metagenome and metagenomics among others has contributed to misunderstanding of many study results by the scientific community and the general public alike. A few review articles have previously defined those terms, but mainly as sidebars, and no clear definitions or use cases have been published. In this editorial, we aim to propose clear definitions of each of these terms, which we would implore scientists in the field to adopt and perfect.

X Demographics

X Demographics

The data shown below were collected from the profiles of 154 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 2,185 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 11 <1%
Brazil 3 <1%
United Kingdom 3 <1%
Canada 3 <1%
India 2 <1%
France 2 <1%
South Africa 1 <1%
Italy 1 <1%
New Zealand 1 <1%
Other 6 <1%
Unknown 2152 98%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 334 15%
Student > Master 302 14%
Student > Bachelor 277 13%
Researcher 253 12%
Student > Doctoral Student 128 6%
Other 272 12%
Unknown 619 28%
Readers by discipline Count As %
Agricultural and Biological Sciences 431 20%
Biochemistry, Genetics and Molecular Biology 334 15%
Medicine and Dentistry 199 9%
Immunology and Microbiology 153 7%
Environmental Science 69 3%
Other 289 13%
Unknown 710 32%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 168. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 10 April 2024.
All research outputs
#246,374
of 25,770,491 outputs
Outputs from Microbiome
#58
of 1,792 outputs
Outputs of similar age
#2,562
of 275,774 outputs
Outputs of similar age from Microbiome
#1
of 15 outputs
Altmetric has tracked 25,770,491 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 99th percentile: it's in the top 5% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 1,792 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 38.1. This one has done particularly well, scoring higher than 96% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 275,774 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 99% of its contemporaries.
We're also able to compare this research output to 15 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 93% of its contemporaries.