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Data Mining for Systems Biology

Overview of attention for book
Cover of 'Data Mining for Systems Biology'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Identifying Bacterial Strains from Sequencing Data
  3. Altmetric Badge
    Chapter 2 MetaVW: Large-Scale Machine Learning for Metagenomics Sequence Classification
  4. Altmetric Badge
    Chapter 3 Online Interactive Microbial Classification and Geospatial Distributional Analysis Using BioAtlas
  5. Altmetric Badge
    Chapter 4 Generative Models for Quantification of DNA Modifications
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    Chapter 5 DiMmer: Discovery of Differentially Methylated Regions in Epigenome-Wide Association Study (EWAS) Data
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    Chapter 6 Implementing a Transcription Factor Interaction Prediction System Using the GenoMetric Query Language
  8. Altmetric Badge
    Chapter 7 Multiple Testing Tool to Detect Combinatorial Effects in Biology
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    Chapter 8 SiBIC: A Tool for Generating a Network of Biclusters Captured by Maximal Frequent Itemset Mining
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    Chapter 9 Computing and Visualizing Gene Function Similarity and Coherence with NaviGO
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    Chapter 10 Analyzing Glycan-Binding Profiles Using Weighted Multiple Alignment of Trees
  12. Altmetric Badge
    Chapter 11 Analysis of Fluxomic Experiments with Principal Metabolic Flux Mode Analysis
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    Chapter 12 Analyzing Tandem Mass Spectra Using the DRIP Toolkit: Training, Searching, and Post-Processing
  14. Altmetric Badge
    Chapter 13 Sparse Modeling to Analyze Drug–Target Interaction Networks
  15. Altmetric Badge
    Chapter 14 DrugE-Rank: Predicting Drug-Target Interactions by Learning to Rank
  16. Altmetric Badge
    Chapter 15 MeSHLabeler and DeepMeSH: Recent Progress in Large-Scale MeSH Indexing
  17. Altmetric Badge
    Chapter 16 Disease Gene Classification with Metagraph Representations
  18. Altmetric Badge
    Chapter 17 Inferring Antimicrobial Resistance from Pathogen Genomes in KEGG
Attention for Chapter 14: DrugE-Rank: Predicting Drug-Target Interactions by Learning to Rank
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  • Above-average Attention Score compared to outputs of the same age and source (60th percentile)

Mentioned by

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3 X users

Citations

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Chapter title
DrugE-Rank: Predicting Drug-Target Interactions by Learning to Rank
Chapter number 14
Book title
Data Mining for Systems Biology
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-8561-6_14
Pubmed ID
Book ISBNs
978-1-4939-8560-9, 978-1-4939-8561-6
Authors

Jieyao Deng, Qingjun Yuan, Hiroshi Mamitsuka, Shanfeng Zhu, Deng, Jieyao, Yuan, Qingjun, Mamitsuka, Hiroshi, Zhu, Shanfeng

Abstract

Identifying drug-target interactions is crucial for the success of drug discovery. Approaches based on machine learning for this problem can be divided into two types: feature-based and similarity-based methods. By utilizing the "Learning to rank" framework, we propose a new method, DrugE-Rank, to combine these two different types of methods for improving the prediction performance of new candidate drugs and targets. DrugE-Rank is available at http://datamining-iip.fudan.edu.cn/service/DrugE-Rank/ .

X Demographics

X Demographics

The data shown below were collected from the profiles of 3 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 4 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 4 100%

Demographic breakdown

Readers by professional status Count As %
Professor 1 25%
Student > Bachelor 1 25%
Researcher 1 25%
Unknown 1 25%
Readers by discipline Count As %
Pharmacology, Toxicology and Pharmaceutical Science 1 25%
Computer Science 1 25%
Agricultural and Biological Sciences 1 25%
Unknown 1 25%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 27 July 2018.
All research outputs
#15,177,072
of 23,344,526 outputs
Outputs from Methods in molecular biology
#4,835
of 13,338 outputs
Outputs of similar age
#257,756
of 444,166 outputs
Outputs of similar age from Methods in molecular biology
#510
of 1,502 outputs
Altmetric has tracked 23,344,526 research outputs across all sources so far. This one is in the 32nd percentile – i.e., 32% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,338 research outputs from this source. They receive a mean Attention Score of 3.4. This one has gotten more attention than average, scoring higher than 59% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 444,166 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 39th percentile – i.e., 39% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,502 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 60% of its contemporaries.