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ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization

Overview of attention for article published in Molecular BioSystems, November 2015
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • Among the highest-scoring outputs from this source (#20 of 1,180)
  • High Attention Score compared to outputs of the same age (90th percentile)
  • High Attention Score compared to outputs of the same age and source (97th percentile)

Mentioned by

blogs
1 blog
twitter
8 tweeters

Readers on

mendeley
85 Mendeley
citeulike
2 CiteULike
Title
ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization
Published in
Molecular BioSystems, November 2015
DOI 10.1039/c5mb00663e
Pubmed ID
Authors

Guangchuang Yu, Qing-Yu He

Abstract

Reactome is a manually curated pathway annotation database for unveiling high-order biological pathways from high-throughput data. ReactomePA is an R/Bioconductor package providing enrichment analyses, including hypergeometric test and gene set enrichment analyses. A functional analysis can be applied to the genomic coordination obtained from a sequencing experiment to analyze the functional significance of genomic loci including cis-regulatory elements and non-coding regions. Comparison among different experiments is also supported. Moreover, ReactomePA provides several visualization functions to produce highly customizable, publication-quality figures. The source code and documents of ReactomePA are freely available through Bioconductor ().

Twitter Demographics

The data shown below were collected from the profiles of 8 tweeters who shared this research output. Click here to find out more about how the information was compiled.

Mendeley readers

The data shown below were compiled from readership statistics for 85 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Spain 1 1%
Germany 1 1%
United Kingdom 1 1%
Brazil 1 1%
Denmark 1 1%
Taiwan 1 1%
United States 1 1%
Hungary 1 1%
Singapore 1 1%
Other 0 0%
Unknown 76 89%

Demographic breakdown

Readers by professional status Count As %
Researcher 31 36%
Student > Ph. D. Student 26 31%
Student > Master 10 12%
Student > Doctoral Student 6 7%
Student > Bachelor 4 5%
Other 8 9%
Readers by discipline Count As %
Agricultural and Biological Sciences 35 41%
Biochemistry, Genetics and Molecular Biology 25 29%
Computer Science 7 8%
Medicine and Dentistry 6 7%
Unspecified 5 6%
Other 7 8%

Attention Score in Context

This research output has an Altmetric Attention Score of 15. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 09 April 2018.
All research outputs
#733,639
of 9,722,917 outputs
Outputs from Molecular BioSystems
#20
of 1,180 outputs
Outputs of similar age
#29,220
of 306,666 outputs
Outputs of similar age from Molecular BioSystems
#3
of 106 outputs
Altmetric has tracked 9,722,917 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 92nd percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 1,180 research outputs from this source. They receive a mean Attention Score of 2.5. This one has done particularly well, scoring higher than 98% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 306,666 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 90% of its contemporaries.
We're also able to compare this research output to 106 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 97% of its contemporaries.