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chromDraw: an R package for visualization of linear and circular karyotypes

Overview of attention for article published in Chromosome Research, January 2016
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Title
chromDraw: an R package for visualization of linear and circular karyotypes
Published in
Chromosome Research, January 2016
DOI 10.1007/s10577-015-9513-5
Pubmed ID
Authors

Jan Janečka, Martin A. Lysak

Abstract

Species-specific sets of chromosomes-karyotypes-are traditionally depicted as linear ideograms with individual chromosomes represented by vertical bars. However, linear visualization has its limitations when the shared collinearity and/or chromosomal rearrangements differentiating two or more karyotypes need to be demonstrated. In these instances, circular visualization might provide easier comprehension and interpretation of inter-species chromosomal collinearity. The chromDraw graphical tool was developed as a user-friendly graphical tool for visualizing both linear and circular karyotypes based on the same input data matrix. The output graphics, saved in two different formats (EPS and SVG), can be easily imported to and modified in presentation and image-editing computer programs. The tool is freely distributed under GNU General Public License (GPL) and can be installed from Bioconductor or from the chromDraw home page.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 24 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 24 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 7 29%
Researcher 5 21%
Student > Master 2 8%
Lecturer 1 4%
Student > Bachelor 1 4%
Other 5 21%
Unknown 3 13%
Readers by discipline Count As %
Agricultural and Biological Sciences 14 58%
Biochemistry, Genetics and Molecular Biology 5 21%
Unspecified 1 4%
Unknown 4 17%