Pattern Recognition in Bioinformatics

Chapter 1 Robust Community Detection Methods with Resolution Parameter for Complex Detection in Protein Protein Interaction Networks

Chapter 2 Machine Learning Scoring Functions Based on Random Forest and Support Vector Regression

Chapter 3 A Genetic Algorithm for Scale-Based Translocon Simulation

Chapter 4 A Framework of Gene Subset Selection Using Multiobjective Evolutionary Algorithm

Chapter 5 Multiple Tree Alignment with Weights Applied to Carbohydrates to Extract Binding Recognition Patterns

Chapter 6 A Unified Adaptive Co-identification Framework for High-D Expression Data

Chapter 7 Protein Clustering on a Grassmann Manifold

Chapter 8 Improving the Portability and Performance of jViz.RNA – A Dynamic RNA Visualization Software

Chapter 9 Pattern Recognition in Bioinformatics

Chapter 10 An Open Framework for Extensible Multi-stage Bioinformatics Software

Chapter 11 An Algorithm to Assemble Gene-Protein-Reaction Associations for Genome-Scale Metabolic Model Reconstruction

Chapter 12 A Machine Learning and Chemometrics Assisted Interpretation of Spectroscopic Data – A NMR-Based Metabolomics Platform for the Assessment of Brazilian Propolis

Chapter 14 Pattern Recognition in Bioinformatics

Chapter 15 Cascading Discriminant and Generative Models for Protein Secondary Structure Prediction

Chapter 16 Improvement of the Protein–Protein Docking Prediction by Introducing a Simple Hydrophobic Interaction Model: An Application to Interaction Pathway Analysis

Chapter 17 Representation of Protein Secondary Structure Using Bond-Orientational Order Parameters

Chapter 18 Diagnose the Premalignant Pancreatic Cancer Using High Dimensional Linear Machine

Chapter 19 Predicting V(D)J Recombination Using Conditional Random Fields

Chapter 20 A Simple Genetic Algorithm for Biomarker Mining

Chapter 21 Finding Conserved Regions in Protein Structures Using Support Vector Machines and Structure Alignment

Chapter 22 Aligning Discovered Patterns from Protein Family Sequences

Chapter 23 Application of the Burrows-Wheeler Transform for Searching for Approximate Tandem Repeats

Chapter 24 Pattern Recognition for Subfamily Level Classification of GPCRs Using Motif Distillation and Distinguishing Power Evaluation