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Advances in Systems Biology

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Cover of 'Advances in Systems Biology'

Table of Contents

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    Book Overview
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    Chapter 1 Modular Analysis of Biological Networks
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    Chapter 2 Modeling Signaling Networks Using High-throughput Phospho-proteomics
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    Chapter 3 Advances in Systems Biology
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    Chapter 4 Signaling Cascades: Consequences of Varying Substrate and Phosphatase Levels
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    Chapter 5 Heterogeneous Biological Network Visualization System: Case Study in Context of Medical Image Data
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    Chapter 6 Evolution of the Cognitive Proteome: From Static to Dynamic Network Models
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    Chapter 7 Molecular Systems Biology of Sic1 in Yeast Cell Cycle Regulation Through Multiscale Modeling
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    Chapter 8 Proteome-Wide Screens in Saccharomyces cerevisiae Using the Yeast GFP Collection
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    Chapter 9 Unraveling the Complex Regulatory Relationships Between Metabolism and Signal Transduction in Cancer
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    Chapter 10 Advances in Systems Biology
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    Chapter 11 Stem Cell Differentiation as a Renewal-Reward Process: Predictions and Validation in the Colonic Crypt
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    Chapter 12 A Dynamic Physical Model of Cell Migration, Differentiation and Apoptosis in Caenorhabditis elegans.
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    Chapter 13 A Modular Model of the Apoptosis Machinery
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    Chapter 14 An Ensemble Approach for Inferring Semi-quantitative Regulatory Dynamics for the Differentiation of Mouse Embryonic Stem Cells Using Prior Knowledge
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    Chapter 15 Cell Death and Life in Cancer: Mathematical Modeling of Cell Fate Decisions
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    Chapter 16 Theoretical Aspects of Cellular Decision-Making and Information-Processing
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    Chapter 17 Zooming in on Yeast Osmoadaptation
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    Chapter 18 Receptor Dynamics in Signaling
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    Chapter 19 A Systems-Biology Approach to Yeast Actin Cables
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    Chapter 20 Modeling Morphodynamic Phenotypes and Dynamic Regimes of Cell Motion
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    Chapter 21 Time-Structure of the Yeast Metabolism In vivo
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    Chapter 22 Coarse Graining Escherichia coli Chemotaxis: From Multi-flagella Propulsion to Logarithmic Sensing.
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    Chapter 23 Self-Feedback in Actin Polymerization
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    Chapter 24 Global Optimization in Systems Biology: Stochastic Methods and Their Applications
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    Chapter 25 Mathematical modeling of the human energy metabolism based on the selfish brain theory.
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    Chapter 26 Identification of sensitive enzymes in the photosynthetic carbon metabolism.
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    Chapter 27 Formal Methods for Checking the Consistency of Biological Models
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    Chapter 28 Global Parameter Identification of Stochastic Reaction Networks from Single Trajectories
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    Chapter 29 A Systems Biology View of Adaptation in Sensory Mechanisms
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    Chapter 30 Leveraging Modeling Approaches: Reaction Networks and Rules
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    Chapter 31 Why and How to Expand the Role of Systems Biology in Pharmaceutical Research and Development
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    Chapter 32 Multiscale mechanistic modeling in pharmaceutical research and development.
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    Chapter 33 Re-analysis of Bipolar Disorder and Schizophrenia Gene Expression Complements the Kraepelinian Dichotomy
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    Chapter 34 Bringing Together Models from Bottom-Up and Top-Down Approaches: An Application for Growth of Escherichia coli on Different Carbohydrates
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    Chapter 35 A Differential Equation Model to Investigate the Dynamics of the Bovine Estrous Cycle
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    Chapter 36 Reducing systems biology to practice in pharmaceutical company research; selected case studies.
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    Chapter 37 System-Scale Network Modeling of Cancer Using EPoC
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    Chapter 38 Early Patient Stratification and Predictive Biomarkers in Drug Discovery and Development
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    Chapter 39 Biomedical atlases: systematics, informatics and analysis.
Attention for Chapter 32: Multiscale mechanistic modeling in pharmaceutical research and development.
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Chapter title
Multiscale mechanistic modeling in pharmaceutical research and development.
Chapter number 32
Book title
Advances in Systems Biology
Published in
Advances in experimental medicine and biology, December 2011
DOI 10.1007/978-1-4419-7210-1_32
Pubmed ID
Book ISBNs
978-1-4419-7209-5, 978-1-4419-7210-1
Authors

Kuepfer L, Lippert J, Eissing T, Lars Kuepfer, Jörg Lippert, Thomas Eissing, Kuepfer, Lars, Lippert, Jörg, Eissing, Thomas

Abstract

Discontinuation of drug development projects due to lack of efficacy or adverse events is one of the main cost drivers in pharmaceutical research and development (R&D). Investments have to be written-off and contribute to the total costs of a successful drug candidate receiving marketing authorization and allowing return on invest. A vital risk for pharmaceutical innovator companies is late stage clinical failure since costs for individual clinical trials may exceed the one billion Euro threshold. To guide investment decisions and to safeguard maximum medical benefit and safety for patients recruited in clinical trials, it is therefore essential to understand the clinical consequences of all information and data generated. The complexity of the physiological and pathophysiological processes and the sheer amount of information available overcharge the mental capacity of any human being and prevent a prediction of the success in clinical development. A rigorous integration of knowledge, assumption, and experimental data into computational models promises a significant improvement of the rationalization of decision making in pharmaceutical industry. We here give an overview of the current status of modeling and simulation in pharmaceutical R&D and outline the perspectives of more recent developments in mechanistic modeling. Specific modeling approaches for different biological scales ranging from intracellular processes to whole organism physiology are introduced and an example for integrative multiscale modeling of therapeutic efficiency in clinical oncology trials is showcased.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 44 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Norway 2 5%
Chile 1 2%
Germany 1 2%
United States 1 2%
Unknown 39 89%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 12 27%
Researcher 10 23%
Student > Postgraduate 6 14%
Student > Master 3 7%
Other 2 5%
Other 3 7%
Unknown 8 18%
Readers by discipline Count As %
Agricultural and Biological Sciences 10 23%
Pharmacology, Toxicology and Pharmaceutical Science 5 11%
Medicine and Dentistry 5 11%
Computer Science 4 9%
Biochemistry, Genetics and Molecular Biology 3 7%
Other 7 16%
Unknown 10 23%