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State-Space Analysis of Time-Varying Higher-Order Spike Correlation for Multiple Neural Spike Train Data

Overview of attention for article published in PLoS Computational Biology, March 2012
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  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (89th percentile)
  • Good Attention Score compared to outputs of the same age and source (78th percentile)

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20 X users
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1 Facebook page
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1 Google+ user

Citations

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122 Dimensions

Readers on

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249 Mendeley
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6 CiteULike
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Title
State-Space Analysis of Time-Varying Higher-Order Spike Correlation for Multiple Neural Spike Train Data
Published in
PLoS Computational Biology, March 2012
DOI 10.1371/journal.pcbi.1002385
Pubmed ID
Authors

Hideaki Shimazaki, Shun-ichi Amari, Emery N. Brown, Sonja Grün

Abstract

Precise spike coordination between the spiking activities of multiple neurons is suggested as an indication of coordinated network activity in active cell assemblies. Spike correlation analysis aims to identify such cooperative network activity by detecting excess spike synchrony in simultaneously recorded multiple neural spike sequences. Cooperative activity is expected to organize dynamically during behavior and cognition; therefore currently available analysis techniques must be extended to enable the estimation of multiple time-varying spike interactions between neurons simultaneously. In particular, new methods must take advantage of the simultaneous observations of multiple neurons by addressing their higher-order dependencies, which cannot be revealed by pairwise analyses alone. In this paper, we develop a method for estimating time-varying spike interactions by means of a state-space analysis. Discretized parallel spike sequences are modeled as multi-variate binary processes using a log-linear model that provides a well-defined measure of higher-order spike correlation in an information geometry framework. We construct a recursive Bayesian filter/smoother for the extraction of spike interaction parameters. This method can simultaneously estimate the dynamic pairwise spike interactions of multiple single neurons, thereby extending the Ising/spin-glass model analysis of multiple neural spike train data to a nonstationary analysis. Furthermore, the method can estimate dynamic higher-order spike interactions. To validate the inclusion of the higher-order terms in the model, we construct an approximation method to assess the goodness-of-fit to spike data. In addition, we formulate a test method for the presence of higher-order spike correlation even in nonstationary spike data, e.g., data from awake behaving animals. The utility of the proposed methods is tested using simulated spike data with known underlying correlation dynamics. Finally, we apply the methods to neural spike data simultaneously recorded from the motor cortex of an awake monkey and demonstrate that the higher-order spike correlation organizes dynamically in relation to a behavioral demand.

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X Demographics

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 249 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 11 4%
Germany 7 3%
Japan 5 2%
France 2 <1%
United Kingdom 2 <1%
Chile 1 <1%
Ireland 1 <1%
Netherlands 1 <1%
Switzerland 1 <1%
Other 7 3%
Unknown 211 85%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 65 26%
Researcher 57 23%
Student > Master 26 10%
Student > Bachelor 19 8%
Professor 14 6%
Other 49 20%
Unknown 19 8%
Readers by discipline Count As %
Agricultural and Biological Sciences 64 26%
Neuroscience 46 18%
Computer Science 27 11%
Engineering 26 10%
Physics and Astronomy 20 8%
Other 39 16%
Unknown 27 11%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 12. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 17 February 2021.
All research outputs
#3,035,553
of 25,806,080 outputs
Outputs from PLoS Computational Biology
#2,644
of 9,043 outputs
Outputs of similar age
#17,857
of 169,528 outputs
Outputs of similar age from PLoS Computational Biology
#24
of 110 outputs
Altmetric has tracked 25,806,080 research outputs across all sources so far. Compared to these this one has done well and is in the 88th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 9,043 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 20.4. This one has gotten more attention than average, scoring higher than 70% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 169,528 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 89% of its contemporaries.
We're also able to compare this research output to 110 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 78% of its contemporaries.