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Bioinformatics and Biomedical Engineering

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Cover of 'Bioinformatics and Biomedical Engineering'

Table of Contents

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    Book Overview
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    Chapter 1 The Complexity of Some Pattern Problems in the Logical Analysis of Large Genomic Data Sets
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    Chapter 2 Development of a Handheld Side-Stream Breath Analyser for Point of Care Metabolic Rate Measurement
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    Chapter 3 Confluence of Genes Related to the Combined Etiology DOISm (Diabetes, Obesity, Inflammation and Metabolic Syndrome) in Dissecting Nutritional Phenotypes
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    Chapter 4 Studying the Herd Immunity Effect of the Varicella Vaccine in the Community of Valencia, Spain
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    Chapter 5 Angel: Towards a Multi-level Method for the Analysis of Variants in Individual Genomes
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    Chapter 6 Transcriptome-Based Identification of a Seed Olive Legumin (11S Globulin). Characterization of Subunits, 3D Modelling and Molecular Assessment of Allergenicity
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    Chapter 7 A Feature Selection Scheme for Accurate Identification of Alzheimer’s Disease
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    Chapter 8 HYDROWEB, an Online Tool for the Calculation of Hydrodynamic Properties of Macromolecules
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    Chapter 9 The Use of the Miyazawa-Jernigan Residue Contact Potential in Analyses of Molecular Interaction and Recognition with Complementary Peptides
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    Chapter 10 Comparative Analysis of microRNA-Target Gene Interaction Prediction Algorithms - The Attempt to Compare the Results of Three Algorithms
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    Chapter 11 A Novel Divisive iK-Means Algorithm with Region-Driven Feature Selection as a Tool for Automated Detection of Tumour Heterogeneity in MALDI IMS Experiments
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    Chapter 12 Multigene P-value Integration Based on SNPs Investigation for Seeking Radiosensitivity Signatures
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    Chapter 13 Epithelial-Mesenchymal Transition Regulatory Network-Based Feature Selection in Lung Cancer Prognosis Prediction
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    Chapter 14 Tracking a Real Liver Using a Virtual Liver and an Experimental Evaluation with Kinect v2
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    Chapter 15 Thermal Imaging-Based Muscular Activity in the Biomechanical Study of Surgeons
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    Chapter 16 FCM-Based Method for MRI Segmentation of Anatomical Structure
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    Chapter 17 An Automated Tensorial Classification Procedure for Left Ventricular Hypertrophic Cardiomyopathy
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    Chapter 18 Depth Image Matching Algorithm for Deforming and Cutting a Virtual Liver via Its Real Liver Image Captured Using Kinect v2
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    Chapter 19 Optic Disc Segmentation with Kapur-ScPSO Based Cascade Multithresholding
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    Chapter 20 Uncertainty in 1D and 3D Models of a Fiber Stimulated by an External Electrode
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    Chapter 21 A Comparison of Feature Ranking and Rank Aggregation Techniques in Automatic Sleep Stage Classification Based on Polysomnographic Signals
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    Chapter 22 Improved Dynamic Time Warping for Abnormality Detection in ECG Time Series
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    Chapter 23 Hardware Accelerator to Compute the Minimum Embedding Dimension of ECG Records
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    Chapter 24 Low-Power, Low-Latency Hermite Polynomial Characterization of Heartbeats Using a Field-Programmable Gate Array
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    Chapter 25 Assessing Parallel Heterogeneous Computer Architectures for Multiobjective Feature Selection on EEG Classification
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    Chapter 26 Prediction of Proinflammatory Potentials of Engine Exhausts by Integrating Chemical and Biological Features
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    Chapter 27 Calculating Elementary Flux Modes with Variable Neighbourhood Search
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    Chapter 28 Using Nets-Within-Nets for Modeling Differentiating Cells in the Epigenetic Landscape
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    Chapter 29 Simulations of Cardiac Electrophysiology Combining GPU and Adaptive Mesh Refinement Algorithms
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    Chapter 30 A Plasma Flow Model in the Interstitial Tissue Due to Bacterial Infection
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    Chapter 31 Reactive Interstitial and Reparative Fibrosis as Substrates for Cardiac Ectopic Pacemakers and Reentries
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    Chapter 32 Miyazawa-Jernigan Contact Potentials and Carter-Wolfenden Vapor-to-Cyclohexane and Water-to-Cyclohexane Scales as Parameters for Calculating Amino Acid Pair Distances
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    Chapter 33 Inter-observer Reliability and Agreement Study on Early Diagnosis of Diabetic Retinopathy and Diabetic Macular Edema Risk
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    Chapter 34 Automated Detection of Diabetic Macular Edema Risk in Fundus Images
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    Chapter 35 Use of Mobile Application for Nutrition Health Education
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    Chapter 36 Automatic Workflow for the Identification of Constitutively-Expressed Genes Based on Mapped NGS Reads
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    Chapter 37 Influence of Normalization on the Analysis of Electroanatomical Maps with Manifold Harmonics
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    Chapter 38 AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing
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    Chapter 39 Prioritization of Schizophrenia Risk Genes by a Network-Regularized Logistic Regression Method
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    Chapter 40 GNATY: Optimized NGS Variant Calling and Coverage Analysis
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    Chapter 41 De Novo Assembly and Cluster Analysis of Siberian Larch Transcriptome and Genome
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    Chapter 42 Sainet: An Image Processing App for Assistance of Visually Impaired People in Social Interaction Scenarios
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    Chapter 43 The Effect of Transcranial Direct Current Stimulation (tDCS) Over Human Motor Function
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    Chapter 44 Evaluation of Cervical Posture Improvement of Children with Cerebral Palsy After Physical Therapy with a HCI Based on Head Movements and Serious Videogames
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    Chapter 45 Enriched Environment Affects Positively a Progression of Neurodegeneration: Elastic Maps-Based Analysis
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    Chapter 46 Clustering of Multi-image Sets Using Rényi Information Entropy
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    Chapter 47 Least Information Loss (LIL) Conversion of Digital Images and Lessons Learned for Scientific Image Inspection
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    Chapter 48 Visual Exploration of Principles of Formation of Microscopic Image Intensities Using Image Explorer Software
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    Chapter 49 On Optimization of FRAP Experiments: Model-Based Sensitivity Analysis Approach
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    Chapter 50 A Semantic-Based Metadata Validation for an Automated High-Throughput Screening Workflow: Case Study in CytomicsDB
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    Chapter 51 Reachability of the Therapeutic Target in the Systems with Parameters Switch
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    Chapter 52 The Case for Docker in Multicloud Enabled Bioinformatics Applications
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    Chapter 53 Real Time GPU-Based Segmentation and Tracking of the Left Ventricle on 2D Echocardiography
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    Chapter 54 Parallel Ant Colony Optimization for the HP Protein Folding Problem
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    Chapter 55 Neuroimaging Registration on GPU: Energy-Aware Acceleration
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    Chapter 56 Unleashing the Graphic Processing Units-Based Version of NAMD
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    Chapter 57 Consistency Verification of Marker-Less Gait Assessment System for Stair Walking
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    Chapter 58 Full Body Gesture Recognition for Human-Machine Interaction in Intelligent Spaces
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    Chapter 59 A Web System for Managing and Monitoring Smart Environments
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    Chapter 60 A Study in Experimental Methods of Human-Computer Communication for Patients After Severe Brain Injuries
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    Chapter 61 Random Forests for Quality Control in G-Protein Coupled Receptor Databases
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    Chapter 62 Automated Quality Control for Proton Magnetic Resonance Spectroscopy Data Using Convex Non-negative Matrix Factorization
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    Chapter 63 A Machine Learning Methodology for Enzyme Functional Classification Combining Structural and Protein Sequence Descriptors
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    Chapter 64 Gene-Disease Prioritization Through Cost-Sensitive Graph-Based Methodologies
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    Chapter 65 Network Ranking Assisted Semantic Data Mining
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    Chapter 66 A Comprehensive Comparison of Two MEDLINE Annotators for Disease and Gene Linkage: Sometimes Less is More
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    Chapter 67 A Mechanistic Study of lncRNA Fendrr Regulation of FoxF1 Lung Cancer Tumor Supressor
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    Chapter 68 Evaluation of Disambiguation Strategies on Biomedical Text Categorization
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    Chapter 69 Biomolecular Annotation Integration and Querying to Help Unveiling New Biomedical Knowledge
Attention for Chapter 38: AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing
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Chapter title
AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing
Chapter number 38
Book title
Bioinformatics and Biomedical Engineering
Published by
Springer International Publishing, January 2016
DOI 10.1007/978-3-319-31744-1_38
Book ISBNs
978-3-31-931743-4, 978-3-31-931744-1
Authors

Huijun Mai, Dinghua Li, Yifan Zhang, Henry Chi-Ming Leung, Ruibang Luo, Hing-Fung Ting, Tak-Wah Lam

Editors

Francisco Ortuño, Ignacio Rojas

Twitter Demographics

The data shown below were collected from the profiles of 2 tweeters who shared this research output. Click here to find out more about how the information was compiled.

Mendeley readers

The data shown below were compiled from readership statistics for 8 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 8 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 3 38%
Researcher 1 13%
Unspecified 1 13%
Other 1 13%
Student > Doctoral Student 1 13%
Other 0 0%
Unknown 1 13%
Readers by discipline Count As %
Agricultural and Biological Sciences 2 25%
Computer Science 2 25%
Biochemistry, Genetics and Molecular Biology 1 13%
Environmental Science 1 13%
Unspecified 1 13%
Other 0 0%
Unknown 1 13%