@PhilippBayer Trimmomatic seems to leave many adapter-derived bases in reads (e.g., https://t.co/OgivA4U9zJ). Perhaps also try Kaiju to id contaminants in protein space? I have found thousands of likely contaminants in insect genomes. Here is an example ht
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SeqPurge: highly-sensitive adapter trimming for paired-end #NGS data https://t.co/sth67V6i2B #bioinformatics
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SeqPurge: highly-sensitive adapter trimming for paired-end NGS data https://t.co/A1xPQNEPYy #bmcbioinformatics
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SeqPurge: highly-sensitive adapter trimming for paired-end #NGS data https://t.co/YqPXWKhnkE #bmcbioinformatics