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The Effects of FreeSurfer Version, Workstation Type, and Macintosh Operating System Version on Anatomical Volume and Cortical Thickness Measurements

Overview of attention for article published in PLOS ONE, June 2012
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  • In the top 5% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (99th percentile)
  • High Attention Score compared to outputs of the same age and source (99th percentile)

Mentioned by

news
1 news outlet
blogs
6 blogs
twitter
184 X users
facebook
6 Facebook pages
googleplus
4 Google+ users
reddit
3 Redditors
pinterest
1 Pinner

Citations

dimensions_citation
318 Dimensions

Readers on

mendeley
491 Mendeley
citeulike
6 CiteULike
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Title
The Effects of FreeSurfer Version, Workstation Type, and Macintosh Operating System Version on Anatomical Volume and Cortical Thickness Measurements
Published in
PLOS ONE, June 2012
DOI 10.1371/journal.pone.0038234
Pubmed ID
Authors

Ed H. B. M. Gronenschild, Petra Habets, Heidi I. L. Jacobs, Ron Mengelers, Nico Rozendaal, Jim van Os, Machteld Marcelis

Abstract

FreeSurfer is a popular software package to measure cortical thickness and volume of neuroanatomical structures. However, little if any is known about measurement reliability across various data processing conditions. Using a set of 30 anatomical T1-weighted 3T MRI scans, we investigated the effects of data processing variables such as FreeSurfer version (v4.3.1, v4.5.0, and v5.0.0), workstation (Macintosh and Hewlett-Packard), and Macintosh operating system version (OSX 10.5 and OSX 10.6). Significant differences were revealed between FreeSurfer version v5.0.0 and the two earlier versions. These differences were on average 8.8 ± 6.6% (range 1.3-64.0%) (volume) and 2.8 ± 1.3% (1.1-7.7%) (cortical thickness). About a factor two smaller differences were detected between Macintosh and Hewlett-Packard workstations and between OSX 10.5 and OSX 10.6. The observed differences are similar in magnitude as effect sizes reported in accuracy evaluations and neurodegenerative studies.The main conclusion is that in the context of an ongoing study, users are discouraged to update to a new major release of either FreeSurfer or operating system or to switch to a different type of workstation without repeating the analysis; results thus give a quantitative support to successive recommendations stated by FreeSurfer developers over the years. Moreover, in view of the large and significant cross-version differences, it is concluded that formal assessment of the accuracy of FreeSurfer is desirable.

X Demographics

X Demographics

The data shown below were collected from the profiles of 184 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 491 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 24 5%
Germany 6 1%
Netherlands 6 1%
United Kingdom 6 1%
Spain 3 <1%
Italy 3 <1%
France 2 <1%
Japan 2 <1%
Canada 2 <1%
Other 10 2%
Unknown 427 87%

Demographic breakdown

Readers by professional status Count As %
Researcher 125 25%
Student > Ph. D. Student 118 24%
Student > Master 47 10%
Student > Bachelor 32 7%
Professor > Associate Professor 26 5%
Other 98 20%
Unknown 45 9%
Readers by discipline Count As %
Psychology 97 20%
Medicine and Dentistry 92 19%
Neuroscience 72 15%
Agricultural and Biological Sciences 48 10%
Computer Science 36 7%
Other 61 12%
Unknown 85 17%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 198. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 15 October 2022.
All research outputs
#203,236
of 25,770,491 outputs
Outputs from PLOS ONE
#3,008
of 224,605 outputs
Outputs of similar age
#861
of 179,857 outputs
Outputs of similar age from PLOS ONE
#32
of 3,785 outputs
Altmetric has tracked 25,770,491 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 99th percentile: it's in the top 5% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 224,605 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 15.8. This one has done particularly well, scoring higher than 98% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 179,857 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 99% of its contemporaries.
We're also able to compare this research output to 3,785 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 99% of its contemporaries.