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Dinucleotide controlled null models for comparative RNA gene prediction

Overview of attention for article published in BMC Bioinformatics, May 2008
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Title
Dinucleotide controlled null models for comparative RNA gene prediction
Published in
BMC Bioinformatics, May 2008
DOI 10.1186/1471-2105-9-248
Pubmed ID
Authors

Tanja Gesell, Stefan Washietl

Abstract

Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatics. 8:33] that RNA gene prediction programs can be biased by the genomic dinucleotide content, in particular those programs using a thermodynamic folding model including stacking energies. As a consequence, there is need for dinucleotide-preserving control strategies to assess the significance of such predictions. While there have been randomization algorithms for single sequences for many years, the problem has remained challenging for multiple alignments and there is currently no algorithm available.

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X Demographics

The data shown below were collected from the profiles of 4 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 60 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United Kingdom 2 3%
Brazil 1 2%
Australia 1 2%
Denmark 1 2%
United States 1 2%
Unknown 54 90%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 20 33%
Researcher 13 22%
Student > Bachelor 5 8%
Professor 4 7%
Professor > Associate Professor 3 5%
Other 8 13%
Unknown 7 12%
Readers by discipline Count As %
Agricultural and Biological Sciences 27 45%
Biochemistry, Genetics and Molecular Biology 11 18%
Computer Science 9 15%
Medicine and Dentistry 2 3%
Immunology and Microbiology 1 2%
Other 3 5%
Unknown 7 12%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 24 February 2017.
All research outputs
#14,931,785
of 23,881,329 outputs
Outputs from BMC Bioinformatics
#4,825
of 7,454 outputs
Outputs of similar age
#70,897
of 84,809 outputs
Outputs of similar age from BMC Bioinformatics
#37
of 44 outputs
Altmetric has tracked 23,881,329 research outputs across all sources so far. This one is in the 35th percentile – i.e., 35% of other outputs scored the same or lower than it.
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