| #1 |
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Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows
Article in Bioinformatics, September 2018
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| #2 |
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Minimap2: pairwise alignment for nucleotide sequences
Article in Bioinformatics, May 2018
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| #3 |
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Nextstrain: real-time tracking of pathogen evolution
Article in Bioinformatics, May 2018
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| #4 |
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BioBERT: a pre-trained biomedical language representation model for biomedical text mining
Article in Bioinformatics, September 2019
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| #5 |
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TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity
Article in Bioinformatics, March 2022
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| #6 |
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ggkegg: analysis and visualization of KEGG data utilizing the grammar of graphics
Article in Bioinformatics, October 2023
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| #7 |
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The Sequence Alignment/Map format and SAMtools
Article in Bioinformatics, June 2009
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| #8 |
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Modeling polypharmacy side effects with graph convolutional networks
Article in Bioinformatics, June 2018
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| #9 |
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UpSetR: an R package for the visualization of intersecting sets and their properties
Article in Bioinformatics, June 2017
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| #10 |
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Efficient querying of genomic reference databases with gget
Article in Bioinformatics, January 2023
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| #11 |
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fastp: an ultra-fast all-in-one FASTQ preprocessor
Article in Bioinformatics, September 2018
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| #12 |
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Fast and accurate short read alignment with Burrows–Wheeler transform
Article in Bioinformatics, May 2009
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| #13 |
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STAR: ultrafast universal RNA-seq aligner
Article in Bioinformatics, October 2012
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| #14 |
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plotsr: visualizing structural similarities and rearrangements between multiple genomes
Article in Bioinformatics, April 2022
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| #15 |
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Current structure predictors are not learning the physics of protein folding
Article in Bioinformatics, January 2022
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| #16 |
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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Article in Bioinformatics, November 2009
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| #17 |
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Trimmomatic: a flexible trimmer for Illumina sequence data
Article in Bioinformatics, April 2014
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| #18 |
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GeneGPT: augmenting large language models with domain tools for improved access to biomedical information
Article in Bioinformatics, February 2024
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| #19 |
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GenoFig: a user-friendly application for the visualization and comparison of genomic regions
Article in Bioinformatics, June 2024
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| #20 |
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Gos: a declarative library for interactive genomics visualization in Python
Article in Bioinformatics, January 2023
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