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DNA-Protein Interactions

Overview of attention for book
Cover of 'DNA-Protein Interactions'

Table of Contents

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    Book Overview
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    Chapter 1 Electrophoretic Mobility Shift Assay Using Radiolabeled DNA Probes
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    Chapter 2 In Vitro DNase I Footprinting
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    Chapter 3 DNA-Protein Interactions
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    Chapter 4 In Cellulo DNA Analysis: LMPCR Footprinting.
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    Chapter 5 Southwestern Blotting Assay
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    Chapter 6 Single-Molecule Approaches for the Characterization of Riboswitch Folding Mechanisms
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    Chapter 7 Probing of Nascent Riboswitch Transcripts
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    Chapter 8 DNA-Protein Interactions
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    Chapter 9 Precise Identification of Genome-Wide Transcription Start Sites in Bacteria by 5'-Rapid Amplification of cDNA Ends (5'-RACE).
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    Chapter 10 Analysis of DNA Supercoiling Induced by DNA-Protein Interactions.
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    Chapter 11 Precise Identification of DNA-Binding Proteins Genomic Location by Exonuclease Coupled Chromatin Immunoprecipitation (ChIP-exo).
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    Chapter 12 The Cruciform DNA Mobility Shift Assay: A Tool to Study Proteins That Recognize Bent DNA.
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    Chapter 13 Individual and Sequential Chromatin Immunoprecipitation Protocols.
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    Chapter 14 Chromatin Endogenous Cleavage (ChEC) as a Method to Quantify Protein Interaction with Genomic DNA in Saccharomyces cerevisiae.
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    Chapter 15 Selection and Validation of Spacer Sequences for CRISPR-Cas9 Genome Editing and Transcription Regulation in Bacteria.
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    Chapter 16 Detection of Short-Range DNA Interactions in Mammalian Cells Using High-Resolution Circular Chromosome Conformation Capture Coupled to Deep Sequencing.
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    Chapter 17 Global Mapping of Open Chromatin Regulatory Elements by Formaldehyde-Assisted Isolation of Regulatory Elements Followed by Sequencing (FAIRE-seq).
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    Chapter 18 Aggregate and Heatmap Representations of Genome-Wide Localization Data Using VAP, a Versatile Aggregate Profiler.
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    Chapter 19 Circular Dichroism for the Analysis of Protein–DNA Interactions
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    Chapter 20 Quantitative Investigation of Protein–Nucleic Acid Interactions by Biosensor Surface Plasmon Resonance
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    Chapter 21 Identification of Nucleic Acid High Affinity Binding Sequences of Proteins by SELEX
Attention for Chapter 17: Global Mapping of Open Chromatin Regulatory Elements by Formaldehyde-Assisted Isolation of Regulatory Elements Followed by Sequencing (FAIRE-seq).
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