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2-D PAGE Map Analysis

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Cover of '2-D PAGE Map Analysis'

Table of Contents

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    Book Overview
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    Chapter 1 Sources of Experimental Variation in 2-D Maps: The Importance of Experimental Design in Gel-Based Proteomics
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    Chapter 2 Decoding 2-D Maps by Autocovariance Function
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    Chapter 3 Two-Dimensional Gel Electrophoresis Image Analysis via Dedicated Software Packages
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    Chapter 4 Comparative Evaluation of Software Features and Performances
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    Chapter 5 Image Pretreatment Tools I: Algorithms for Map Denoising and Background Subtraction Methods
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    Chapter 6 Image Pretreatment Tools II: Normalization Techniques for 2-DE and 2-D DIGE
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    Chapter 7 Spot Matching of 2-DE Images Using Distance, Intensity, and Pattern Information
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    Chapter 8 Algorithms for Warping of 2-D PAGE Maps
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    Chapter 9 2-DE Gel Analysis: The Spot Detection
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    Chapter 10 2-D PAGE Map Analysis
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    Chapter 11 Detection and Quantification of Protein Spots by Pinnacle
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    Chapter 12 A Novel Gaussian Extrapolation Approach for 2-D Gel Electrophoresis Saturated Protein Spots
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    Chapter 13 Multiple Testing and Pattern Recognition in 2-DE Proteomics
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    Chapter 14 Chemometric Multivariate Tools for Candidate Biomarker Identification: LDA, PLS-DA, SIMCA, Ranking-PCA
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    Chapter 15 The Use of Legendre and Zernike Moment Functions for the Comparison of 2-D PAGE Maps
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    Chapter 16 Nonlinear Dimensionality Reduction by Minimum Curvilinearity for Unsupervised Discovery of Patterns in Multidimensional Proteomic Data
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    Chapter 17 Differential Analysis of 2-D Maps by Pixel-Based Approaches
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