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HDAC/HAT Function Assessment and Inhibitor Development

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Cover of 'HDAC/HAT Function Assessment and Inhibitor Development'

Table of Contents

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    Book Overview
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    Chapter 1 Detection of Autophagy Induction After HDAC Inhibitor Treatment in Leukemic Cells
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    Chapter 2 Assessment of HDACi-Induced Protein Cleavage by Caspases
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    Chapter 3 Assessment of HDACi-Induced Cytotoxicity
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    Chapter 4 Analysis of HDACi-Induced Changes in Chromosomal Passenger Complex Localization
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    Chapter 5 Analysis of Histone Deacetylase-Dependent Effects on Cell Migration Using the Stripe Assay
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    Chapter 6 Using Histone Deacetylase Inhibitors to Analyze the Relevance of HDACs for Translation
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    Chapter 7 Effects of HDACi on Immunological Functions
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    Chapter 8 DNA Fiber Spreading Assay to Test HDACi Effects on DNA and Its Replication
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    Chapter 9 Assessing the Effect of Class I Histone Deacetylase Activity on DNA Double-Strand Break Repair by Homologous Recombination
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    Chapter 10 Establishment and Characterization of Long-Term Cultures Derived from Primary Acute Myeloid Leukemia Cells for HDAC Inhibitor Research
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    Chapter 11 Assessing the Histone Deacetylase Activity of SIRT6 in Primary Murine Hepatocytes via Proximity Ligation Assay
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    Chapter 12 Purification and Analysis of Male Germ Cells from Adult Mouse Testis
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    Chapter 13 Generation of Tissue-Specific Mouse Models to Analyze HDAC Functions
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    Chapter 14 Engineering of Conditional Class I Hdac Knockout Mice and Generation of a Time-Spatial Knockout by a Dual Recombination System
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    Chapter 15 Xenografting of Cancer Cell Lines for In Vivo Screening of the Therapeutic Potential of HDAC Inhibitors
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    Chapter 16 Generation of Xenotransplants from Human Cancer Biopsies to Assess Anti-cancer Activities of HDACi
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    Chapter 17 Phospho-Flow Analysis of Primary Mouse Cells After HDAC Inhibitor Treatment
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    Chapter 18 Evaluation of Innate Immune Gene Expression Following HDAC Inhibitor Treatment by High Throughput qPCR and PhosFlow Cytometry
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    Chapter 19 Assessing HDAC Function in the Regulation of Signal Transducer and Activator of Transcription 5 (STAT5) Activity Using Chromatin Immunoprecipitation (ChIP)
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    Chapter 20 Modulation of STAT1-Driven Transcriptional Activity by Histone Deacetylases
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    Chapter 21 Proximity Ligation Assay to Quantify Foxp3 Acetylation in Regulatory T Cells
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    Chapter 22 Testing the Effects of SIAH Ubiquitin E3 Ligases on Lysine Acetyl Transferases
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    Chapter 23 Assessment of HDACi-Induced Acetylation of Nonhistone Proteins by Mass Spectrometry
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    Chapter 24 Assessing the Role of Paralog-Specific Sumoylation of HDAC1
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    Chapter 25 Analysis of Histone Deacetylases Sumoylation by Immunoprecipitation Techniques
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    Chapter 26 How to Distinguish Between the Activity of HDAC1-3 and HDAC6 with Western Blot
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    Chapter 27 Evaluating the Effect of HDAC8 Inhibition in Malignant Peripheral Nerve Sheath Tumors
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    Chapter 28 Analyzing the Impact of Pan- and Class-Specific HDACi on Differentiation-Associated Factors
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    Chapter 29 Encapsulation of the HDACi Ex527 into Liposomes and Polymer-Based Particles
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    Chapter 30 Preparation of Histone Deacetylase Inhibitor Vorinostat-Loaded Poly d , l -Lactide-co-Glycolide Polymeric Nanoparticles by Nanoprecipitation Method
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    Chapter 31 Generation and Assessment of Fusions Between HDACi and TKi
Attention for Chapter 17: Phospho-Flow Analysis of Primary Mouse Cells After HDAC Inhibitor Treatment
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Chapter title
Phospho-Flow Analysis of Primary Mouse Cells After HDAC Inhibitor Treatment
Chapter number 17
Book title
HDAC/HAT Function Assessment and Inhibitor Development
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6527-4_17
Pubmed ID
Book ISBNs
978-1-4939-6525-0, 978-1-4939-6527-4
Authors

Dagmar Hildebrand, Katharina F. Kubatzky

Abstract

Flow cytometric techniques allow fast, sensitive, and multiparametric analyses at the single cell level. This makes it possible to distinguish subsets of cells within heterogeneous samples. Moreover, flow cytometry has become a frequently used method for the evaluation of therapeutic effects. Here, we describe the analysis of the phosphorylation status of signal transducer and activator of transcription-1 (STAT-1) in primary mouse cells after treatment with histone deacetylase inhibitors (HDACi) that are currently considered anticancer agents. We provide detailed protocols for the preparation of murine bone marrow cells and the staining of HDACi-treated cells, as well as an insight into the concepts of flow cytometry analysis.