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Circular RNAs

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Cover of 'Circular RNAs'

Table of Contents

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    Book Overview
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    Chapter 1 Detection and Reconstruction of Circular RNAs from Transcriptomic Data
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    Chapter 2 Deep Computational Circular RNA Analytics from RNA-seq Data
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    Chapter 3 Genome-Wide circRNA Profiling from RNA-seq Data
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    Chapter 4 Analysis of Circular RNAs Using the Web Tool CircInteractome
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    Chapter 5 Characterization and Validation of Circular RNA and Their Host Gene mRNA Expression Using PCR
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    Chapter 6 Detecting Circular RNAs by RNA Fluorescence In Situ Hybridization
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    Chapter 7 Single-Molecule Fluorescence In Situ Hybridization (FISH) of Circular RNA CDR1as
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    Chapter 8 A Highly Efficient Strategy for Overexpressing circRNAs
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    Chapter 9 Constructing GFP-Based Reporter to Study Back Splicing and Translation of Circular RNA
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    Chapter 10 Northern Blot Analysis of Circular RNAs
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    Chapter 11 Nonradioactive Northern Blot of circRNAs
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    Chapter 12 Characterization of Circular RNA Concatemers
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    Chapter 13 Characterization of Circular RNAs (circRNA) Associated with the Translation Machinery
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    Chapter 14 Synthesis and Engineering of Circular RNAs
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    Chapter 15 Preparation of Circular RNA In Vitro
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    Chapter 16 Discovering circRNA-microRNA Interactions from CLIP-Seq Data
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    Chapter 17 Identification of circRNAs for miRNA Targets by Argonaute2 RNA Immunoprecipitation and Luciferase Screening Assays
Attention for Chapter 17: Identification of circRNAs for miRNA Targets by Argonaute2 RNA Immunoprecipitation and Luciferase Screening Assays
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Chapter title
Identification of circRNAs for miRNA Targets by Argonaute2 RNA Immunoprecipitation and Luciferase Screening Assays
Chapter number 17
Book title
Circular RNAs
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7562-4_17
Pubmed ID
Book ISBNs
978-1-4939-7561-7, 978-1-4939-7562-4
Authors

Yan Li, Bing Chen, Shenglin Huang

Abstract

Circular RNAs from back-spliced exons (circRNAs) represent a novel class of widespread and endogenous RNAs in eukaryotes. circRNAs may bind to microRNAs (miRNAs) and inhibit the activity of miRNAs. Alternatively, miRNAs could also directly target circRNAs and regulate the expression of circRNAs. Here we describe the Argonaute2 (AGO2) RNA immunoprecipitation (RIP) and luciferase screening assays to identify the interaction between circRNAs and miRNAs. The AGO2 RIP assay evaluates the potential of the interaction between circRNAs and miRNAs. The luciferase screening assay investigates the targeting miRNAs and the detail binding sites for a specific circRNA.

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Mendeley readers

The data shown below were compiled from readership statistics for 14 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 14 100%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 4 29%
Student > Ph. D. Student 4 29%
Researcher 2 14%
Unspecified 1 7%
Student > Master 1 7%
Other 0 0%
Unknown 2 14%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 7 50%
Agricultural and Biological Sciences 2 14%
Unspecified 1 7%
Neuroscience 1 7%
Unknown 3 21%