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Transcriptome Data Analysis

Overview of attention for book
Cover of 'Transcriptome Data Analysis'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Comparison of Gene Expression Profiles in Nonmodel Eukaryotic Organisms with RNA-Seq
  3. Altmetric Badge
    Chapter 2 Microarray Data Analysis for Transcriptome Profiling
  4. Altmetric Badge
    Chapter 3 Pathway and Network Analysis of Differentially Expressed Genes in Transcriptomes
  5. Altmetric Badge
    Chapter 4 QuickRNASeq: Guide for Pipeline Implementation and for Interactive Results Visualization
  6. Altmetric Badge
    Chapter 5 Tracking Alternatively Spliced Isoforms from Long Reads by SpliceHunter
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    Chapter 6 RNA-Seq-Based Transcript Structure Analysis with TrBorderExt
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    Chapter 7 Analysis of RNA Editing Sites from RNA-Seq Data Using GIREMI
  9. Altmetric Badge
    Chapter 8 Bioinformatic Analysis of MicroRNA Sequencing Data
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    Chapter 9 Microarray-Based MicroRNA Expression Data Analysis with Bioconductor
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    Chapter 10 Identification and Expression Analysis of Long Intergenic Noncoding RNAs
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    Chapter 11 Analysis of RNA-Seq Data Using TEtranscripts
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    Chapter 12 Computational Analysis of RNA–Protein Interactions via Deep Sequencing
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    Chapter 13 Predicting Gene Expression Noise from Gene Expression Variations
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    Chapter 14 A Protocol for Epigenetic Imprinting Analysis with RNA-Seq Data
  16. Altmetric Badge
    Chapter 15 Single-Cell Transcriptome Analysis Using SINCERA Pipeline
  17. Altmetric Badge
    Chapter 16 Mathematical Modeling and Deconvolution of Molecular Heterogeneity Identifies Novel Subpopulations in Complex Tissues
Attention for Chapter 13: Predicting Gene Expression Noise from Gene Expression Variations
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Chapter title
Predicting Gene Expression Noise from Gene Expression Variations
Chapter number 13
Book title
Transcriptome Data Analysis
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7710-9_13
Pubmed ID
Book ISBNs
978-1-4939-7709-3, 978-1-4939-7710-9
Authors

Xiaojian Shao, Ming-an Sun, Shao, Xiaojian, Sun, Ming-an

Abstract

The level of gene expression is known to vary from cell to cell and even in the same cell over time. This variability provides cells with the ability to mitigate environmental stresses and genetic perturbations, and facilitates gene expression evolution. Recently, many valuable gene expression noise data measured at the single-cell level and gene expression variation measured for cell populations have become available. In this chapter, we show how to perform integrative analysis using these data. Specifically, we introduce how to apply a machine learning technique (support vector regression) to explore the relationship between gene expression variations and stochastic noise.

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The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 10 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 10 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 3 30%
Student > Bachelor 2 20%
Unspecified 1 10%
Researcher 1 10%
Student > Master 1 10%
Other 0 0%
Unknown 2 20%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 3 30%
Agricultural and Biological Sciences 2 20%
Computer Science 1 10%
Unspecified 1 10%
Unknown 3 30%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 12 February 2019.
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#15,494,712
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Outputs from Methods in molecular biology
#5,390
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#269,811
of 442,370 outputs
Outputs of similar age from Methods in molecular biology
#596
of 1,499 outputs
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