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In Situ Hybridization Protocols

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Cover of 'In Situ Hybridization Protocols'

Table of Contents

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    Book Overview
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    Chapter 1 Fixation/Permeabilization Procedure for mRNA In Situ Hybridization of Zebrafish Whole-Mount Oocytes, Embryos, and Larvae
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    Chapter 2 MicroRNA In Situ Hybridization on Whole-Mount Preimplantation Embryos
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    Chapter 3 Whole-Mount In Situ Hybridization (WISH) Optimized for Gene Expression Analysis in Mouse Embryos and Embryoid Bodies
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    Chapter 4 Whole-Mount In Situ Hybridization Using DIG-Labeled Probes in Planarian.
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    Chapter 5 In Situ Hybridization on Whole-Mount Zebrafish Embryos and Young Larvae
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    Chapter 6 LNA-Based In Situ Hybridization Detection of mRNAs in Embryos
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    Chapter 7 Chromogen Detection of microRNA in Frozen Clinical Tissue Samples Using LNA™ Probe Technology.
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    Chapter 8 MicroRNA In Situ Hybridization in Tissue Microarrays.
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    Chapter 9 Fluorescence In Situ Hybridization for Detection of Small RNAs on Frozen Tissue Sections.
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    Chapter 10 Sensitive and Specific In Situ Hybridization for Early Drug Discovery
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    Chapter 11 Zinc-Based Fixation for High-Sensitivity In Situ Hybridization: A Nonradioactive Colorimetric Method for the Detection of Rare Transcripts on Tissue Sections
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    Chapter 12 Dual-Color Ultrasensitive Bright-Field RNA In Situ Hybridization with RNAscope.
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    Chapter 13 Fully Automated Fluorescence-Based Four-Color Multiplex Assay for Co-detection of MicroRNA and Protein Biomarkers in Clinical Tissue Specimens.
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    Chapter 14 Multiplexed miRNA Fluorescence In Situ Hybridization for Formalin-Fixed Paraffin-Embedded Tissues.
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    Chapter 15 Simultaneous detection of nuclear and cytoplasmic RNA variants utilizing stellaris(®) RNA fluorescence in situ hybridization in adherent cells.
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    Chapter 16 Quantitative Ultrasensitive Bright-Field RNA In Situ Hybridization with RNAscope
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    Chapter 17 Identification of Low-Expressing Transcripts of the NPY Receptors’ Family in the Murine Lingual Epithelia
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    Chapter 18 In Situ Hybridization for Fungal Ribosomal RNA Sequences in Paraffin-Embedded Tissues Using Biotin-Labeled Locked Nucleic Acid Probes
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    Chapter 19 In Situ Hybridization Freeze-Assisted Punches (IFAP): Technique for Liquid-Based Tissue Extraction from Thin Slide-Mounted Sections for DNA Methylation Analysis.
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    Chapter 20 miRNA Detection at Single-Cell Resolution Using Microfluidic LNA Flow-FISH.
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    Chapter 21 PNA-Based Fluorescence In Situ Hybridization for Identification of Bacteria in Clinical Samples.
Attention for Chapter 18: In Situ Hybridization for Fungal Ribosomal RNA Sequences in Paraffin-Embedded Tissues Using Biotin-Labeled Locked Nucleic Acid Probes
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Chapter title
In Situ Hybridization for Fungal Ribosomal RNA Sequences in Paraffin-Embedded Tissues Using Biotin-Labeled Locked Nucleic Acid Probes
Chapter number 18
Book title
In Situ Hybridization Protocols
Published in
Methods in molecular biology, January 2014
DOI 10.1007/978-1-4939-1459-3_18
Pubmed ID
Book ISBNs
978-1-4939-1458-6, 978-1-4939-1459-3
Authors

Kathleen T. Montone, Montone, Kathleen T.

Abstract

Ribosomal RNAs (rRNA) are conserved, abundant species-specific sequences that are used for phylogenetically classifying organisms. Due to their abundance and species specificity, rRNA sequences have been established as optimal targets for in situ hybridization (ISH). ISH for rRNA sequences using DNA oligonucleotide probes has been utilized to detect a variety of fungi in paraffin tissues. However, ISH with some oligonucleotide DNA probes produces weak signals, and applications for nucleotide modification may be useful to enhance hybridization signal. ISH with LNA probes has been shown to result in improved ISH signal. A protocol for LNA ISH with biotin-labeled LNA oligonucleotide probes is described.

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The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 6 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 6 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 2 33%
Lecturer 1 17%
Other 1 17%
Student > Ph. D. Student 1 17%
Student > Doctoral Student 1 17%
Other 0 0%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 2 33%
Agricultural and Biological Sciences 2 33%
Veterinary Science and Veterinary Medicine 1 17%
Chemistry 1 17%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 11 June 2015.
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#18,379,018
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Outputs from Methods in molecular biology
#7,871
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Outputs of similar age from Methods in molecular biology
#294
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