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Agrobacterium Protocols

Overview of attention for book
Cover of 'Agrobacterium Protocols'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Gateway ® -Compatible Plant Transformation Vectors
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    Chapter 2 Brachypodium distachyon.
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    Chapter 3 Medicago truncatula Transformation Using Cotyledonary Explants
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    Chapter 4 Medicago truncatula Transformation Using Leaf Explants
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    Chapter 5 Setaria viridis
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    Chapter 6 Barley ( Hordeum vulgare L.) Transformation Using Immature Embryos
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    Chapter 7 Barley ( Hordeum vulgare L.) Transformation Using Embryogenic Pollen Cultures
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    Chapter 8 Maize ( Zea mays L.)
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    Chapter 9 Maize, Tropical (Zea mays L.).
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    Chapter 10 Finger millet [ Eleusine coracana (L.) Gaertn.]
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    Chapter 11 Oat ( Avena sativa L.)
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    Chapter 12 Rice, Indica (Oryza sativa L.)
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    Chapter 13 Rice, Japonica ( Oryza sativa L.)
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    Chapter 14 Sorghum (Sorghum bicolor)
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    Chapter 15 Wheat (Triticum aestivum L.) Transformation Using Immature Embryos.
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    Chapter 16 Wheat (Triticum aestivum L.) Transformation Using Mature Embryos.
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    Chapter 17 Alfalfa ( Medicago sativa L.)
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    Chapter 18 Clovers (Trifolium spp.).
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    Chapter 19 Clover, Red ( Trifolium pratense )
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    Chapter 20 Cowpea [Vigna unguiculata (L.) Walp].
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    Chapter 21 Lentil (Lens culinaris Medik).
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    Chapter 22 Soybean [Glycine max (L.) Merr].
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    Chapter 23 Brassica oleracea and B. napus
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    Chapter 24 Cucumber (Cucumis sativus L.) and Kabocha Squash (Cucurbita moschata Duch).
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    Chapter 25 Pepper, Chili (Capsicum annuum).
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    Chapter 26 Pepper, Sweet ( Capsicum annuum )
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    Chapter 27 Sugar Beet ( Beta vulgaris L.)
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    Chapter 28 Tomato (Solanum lycopersicum).
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    Chapter 29 ERRATUM TO: Sugar Beet ( Beta vulgaris L.)
Attention for Chapter 2: Brachypodium distachyon.
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Chapter title
Brachypodium distachyon.
Chapter number 2
Book title
Agrobacterium Protocols
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-1695-5_2
Pubmed ID
Book ISBNs
978-1-4939-1694-8, 978-1-4939-1695-5
Authors

Jennifer N Bragg, Amy Anderton, Rita Nieu, John P Vogel, Jennifer N. Bragg, John P. Vogel, Bragg, Jennifer N., Anderton, Amy, Nieu, Rita, Vogel, John P.

Abstract

The small grass Brachypodium distachyon has attributes that make it an excellent model for the development and improvement of cereal crops and bioenergy feedstocks. To realize the potential of this system, many tools have been developed (e.g., the complete genome sequence, a large collection of natural accessions, a high density genetic map, BAC libraries, EST sequences, microarrays, etc.). In this chapter, we describe a high-efficiency transformation system, an essential tool for a modern model system. Our method utilizes the natural ability of Agrobacterium tumefaciens to transfer a well-defined region of DNA from its tumor-inducing (Ti) plasmid DNA into the genome of a host plant cell. Immature embryos dissected out of developing B. distachyon seeds generate an embryogenic callus that serves as the source material for transformation and regeneration of transgenic plants. Embryogenic callus is cocultivated with A. tumefaciens carrying a recombinant plasmid containing the desired transformation sequence. Following cocultivation, callus is transferred to selective media to identify and amplify the transgenic tissue. After 2-5 weeks on selection media, transgenic callus is moved onto regeneration media for 2-4 weeks until plantlets emerge. Plantlets are grown in tissue culture until they develop roots and are transplanted into soil. Transgenic plants can be transferred to soil 6-10 weeks after cocultivation. Using this method with hygromycin selection, transformation efficiencies average 42 %, and it is routinely observed that 50-75 % of cocultivated calluses produce transgenic plants. The time from dissecting out embryos to having the first transgenic plants in soil is 14-18 weeks, and the time to harvesting transgenic seeds is 20-31 weeks.

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The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 60 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Brazil 2 3%
Unknown 58 97%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 18 30%
Researcher 10 17%
Student > Master 7 12%
Student > Bachelor 5 8%
Student > Doctoral Student 3 5%
Other 11 18%
Unknown 6 10%
Readers by discipline Count As %
Agricultural and Biological Sciences 36 60%
Biochemistry, Genetics and Molecular Biology 9 15%
Medicine and Dentistry 2 3%
Chemical Engineering 1 2%
Nursing and Health Professions 1 2%
Other 6 10%
Unknown 5 8%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 11 October 2014.
All research outputs
#20,239,689
of 22,766,595 outputs
Outputs from Methods in molecular biology
#9,865
of 13,090 outputs
Outputs of similar age
#295,619
of 352,893 outputs
Outputs of similar age from Methods in molecular biology
#635
of 996 outputs
Altmetric has tracked 22,766,595 research outputs across all sources so far. This one is in the 1st percentile – i.e., 1% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,090 research outputs from this source. They receive a mean Attention Score of 3.3. This one is in the 1st percentile – i.e., 1% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 352,893 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 1st percentile – i.e., 1% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 996 others from the same source and published within six weeks on either side of this one. This one is in the 1st percentile – i.e., 1% of its contemporaries scored the same or lower than it.