Why use "robust" FPKMs?
Posted by burger, at bioinformatics.stackexchange.com,
Both DESeq2 and edgeR have an FPKM/RPKM function that by default uses normalized library sizes ("robust" option in DESeq2).
Both DESeq2 and edgeR have an FPKM/RPKM function that by default uses normalized library sizes ("robust" option in DESeq2).
I am trying to collect gene expression data for the point of fitting gene regulatory networks. My background is primarily in…
Some of you might have read this nice paper: O’Hara RB, Kotze DJ (2010) Do not log-transform count data. Methods in Ecology…