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Protein Bioinformatics

Overview of attention for book
Cover of 'Protein Bioinformatics'

Table of Contents

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    Book Overview
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    Chapter 1 Protein Bioinformatics Databases and Resources
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    Chapter 2 UniProt Protein Knowledgebase
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    Chapter 3 Tutorial on Protein Ontology Resources
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    Chapter 4 CATH-Gene3D: Generation of the Resource and Its Use in Obtaining Structural and Functional Annotations for Protein Sequences
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    Chapter 5 Structure-Based Virtual Screening
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    Chapter 6 Bioinformatics Analysis of Protein Phosphorylation in Plant Systems Biology Using P3DB
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    Chapter 7 Navigating the Glycome Space and Connecting the Glycoproteome
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    Chapter 8 Impact of Nonsynonymous Single-Nucleotide Variations on Post-Translational Modification Sites in Human Proteins
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    Chapter 9 Analysis of Cysteine Redox Post-Translational Modifications in Cell Biology and Drug Pharmacology
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    Chapter 10 Analysis of Protein Phosphorylation and Its Functional Impact on Protein–Protein Interactions via Text Mining of the Scientific Literature
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    Chapter 11 Functional Interaction Network Construction and Analysis for Disease Discovery
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    Chapter 12 Prediction of Protein Interactions by Structural Matching: Prediction of PPI Networks and the Effects of Mutations on PPIs that Combines Sequence and Structural Information
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    Chapter 13 NDEx: A Community Resource for Sharing and Publishing of Biological Networks
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    Chapter 14 Bioinformatics Analysis of Functional Associations of PTMs
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    Chapter 15 Bioinformatics Analysis of PTM-Modified Protein Interaction Networks and Complexes
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    Chapter 16 iPTMnet: Integrative Bioinformatics for Studying PTM Networks
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    Chapter 17 Protein Identification from Tandem Mass Spectra by Database Searching
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    Chapter 18 Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite
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    Chapter 19 Mapping Biological Networks from Quantitative Data-Independent Acquisition Mass Spectrometry: Data to Knowledge Pipelines
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    Chapter 20 Annotation of Alternatively Spliced Proteins and Transcripts with Protein-Folding Algorithms and Isoform-Level Functional Networks
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    Chapter 21 Computational and Statistical Methods for High-Throughput Mass Spectrometry-Based PTM Analysis
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    Chapter 22 Cross-Species PTM Mapping from Phosphoproteomic Data
Attention for Chapter 2: UniProt Protein Knowledgebase
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