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ERK Signaling

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Cover of 'ERK Signaling'

Table of Contents

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    Book Overview
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    Chapter 1 How Genetics Has Helped Piece Together the MAPK Signaling Pathway.
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    Chapter 2 In Vitro Enzyme Kinetics Analysis of EGFR.
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    Chapter 3 High-Throughput Analysis of Mammalian Receptor Tyrosine Kinase Activation in Yeast Cells.
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    Chapter 4 Structural Studies of ERK2 Protein Complexes.
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    Chapter 5 Isolation and Characterization of Intrinsically Active (MEK-Independent) Mutants of Mpk1/Erk.
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    Chapter 6 Assaying Activation and Subcellular Localization of ERK in Cells and Tissues.
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    Chapter 7 Detection and Functional Analysis of SUMO-Modified MEK.
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    Chapter 8 Single-Step Affinity Purification of ERK Signaling Complexes Using the Streptavidin-Binding Peptide (SBP) Tag.
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    Chapter 9 High-Throughput In Vitro Identification of Direct MAPK/Erk Substrates.
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    Chapter 10 Global Identification of ERK Substrates by Phosphoproteomics Based on IMAC and 2D-DIGE.
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    Chapter 11 Analysis of Ras/ERK Compartmentalization by Subcellular Fractionation.
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    Chapter 12 Cell-Based Assays to Study ERK Pathway/Caveolin1 Interactions.
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    Chapter 13 The Nuclear Translocation of ERK.
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    Chapter 14 Visualization of RAS/MAPK Signaling In Situ by the Proximity Ligation Assay (PLA).
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    Chapter 15 Measuring ERK Activity Dynamics in Single Living Cells Using FRET Biosensors.
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    Chapter 16 Quantifying Tensile Force and ERK Phosphorylation on Actin Stress Fibers.
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    Chapter 17 Co-culture Activation of MAP Kinase in Drosophila S2 Cells.
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    Chapter 18 ERK Signaling
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    Chapter 19 3D Organotypic Culture Model to Study Components of ERK Signaling.
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    Chapter 20 Genetic Validation of Cell Proliferation via Ras-Independent Activation of the Raf/Mek/Erk Pathway.
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    Chapter 21 Genome-Wide Analysis of RAS/ERK Signaling Targets.
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    Chapter 22 Probing Chromatin Modifications in Response to ERK Signaling.
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    Chapter 23 Analyzing pERK Activation During Planarian Regeneration.
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    Chapter 24 Discovering Functional ERK Substrates Regulating Caenorhabditis elegans Germline Development.
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    Chapter 25 Reconstructing ERK Signaling in the Drosophila Embryo from Fixed Images.
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    Chapter 26 Using CRISPR-Cas9 to Study ERK Signaling in Drosophila.
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    Chapter 27 Analyzing ERK Signal Dynamics During Zebrafish Somitogenesis.
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    Chapter 28 Modeling RASopathies with Genetically Modified Mouse Models.
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    Chapter 29 Dissecting Cell-Fate Determination Through Integrated Mathematical Modeling of the ERK/MAPK Signaling Pathway.
Attention for Chapter 27: Analyzing ERK Signal Dynamics During Zebrafish Somitogenesis.
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Chapter title
Analyzing ERK Signal Dynamics During Zebrafish Somitogenesis.
Chapter number 27
Book title
ERK Signaling
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6424-6_27
Pubmed ID
Book ISBNs
978-1-4939-6422-2, 978-1-4939-6424-6
Authors

Takaaki Matsui, Yasumasa Bessho

Editors

Gerardo Jimenez

Abstract

During vertebrate development, Erk is activated and regulates multiple cellular processes such as cell growth, differentiation, migration, and adhesion in a spatiotemporal manner. Whole-mount immunohistochemistry using antibodies against diphosphorylated Erk (p-Erk; active form of Erk) is a very useful method for understanding the spatial and temporal patterns of Erk activity during embryonic development. However, the fixation step of this method stops embryo development at a certain time point, making it very difficult to observe and interpret Erk activity dynamics. In this chapter, we describe a strategy that combines immunohistochemistry and quantitative analyses of multiple fixed embryos to reconstruct Erk activity dynamics during zebrafish somitogenesis.

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Mendeley readers

The data shown below were compiled from readership statistics for 5 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 5 100%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 1 20%
Researcher 1 20%
Other 1 20%
Unknown 2 40%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 2 40%
Computer Science 1 20%
Medicine and Dentistry 1 20%
Unknown 1 20%