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Haplotyping

Overview of attention for book
Cover of 'Haplotyping'

Table of Contents

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    Book Overview
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    Chapter 1 Haplotyping of Heterozygous SNPs in Genomic DNA Using Long-Range PCR.
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    Chapter 2 Quantification and Sequencing of Crossover Recombinant Molecules from Arabidopsis Pollen DNA.
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    Chapter 3 PacBio for Haplotyping in Gene Families
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    Chapter 4 High Molecular Weight DNA Enrichment with Peptide Nucleic Acid Probes
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    Chapter 5 High-Throughput Sequencing of the Major Histocompatibility Complex following Targeted Sequence Capture
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    Chapter 6 Pedigree-Defined Haplotypes and Their Applications to Genetic Studies
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    Chapter 7 Haplotyping a Non-meiotic Diploid Fungal Pathogen Using Induced Aneuploidies and SNP/CGH Microarray Analysis.
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    Chapter 8 Whole-Genome Haplotyping of Single Sperm of Daphnia pulex (Crustacea, Anomopoda).
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    Chapter 9 Chromosome-Range Whole-Genome High-Throughput Experimental Haplotyping by Single-Chromosome Microdissection
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    Chapter 10 Phased Genome Sequencing Through Chromosome Sorting
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    Chapter 11 Long Fragment Read (LFR) Technology: Cost-Effective, High-Quality Genome-Wide Molecular Haplotyping
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    Chapter 12 Contiguity-Preserving Transposition Sequencing (CPT-Seq) for Genome-Wide Haplotyping, Assembly, and Single-Cell ATAC-Seq
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    Chapter 13 A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes
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    Chapter 14 Discovery of Rare Haplotypes by Typing Millions of Single-Molecules with Bead Emulsion Haplotyping (BEH)
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    Chapter 15 Computational Haplotype Inference from Pooled Samples
Attention for Chapter 4: High Molecular Weight DNA Enrichment with Peptide Nucleic Acid Probes
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Chapter title
High Molecular Weight DNA Enrichment with Peptide Nucleic Acid Probes
Chapter number 4
Book title
Haplotyping
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6750-6_4
Pubmed ID
Book ISBNs
978-1-4939-6748-3, 978-1-4939-6750-6
Authors

Nicholas M. Murphy, Colin W. Pouton, Helen R. Irving

Editors

Irene Tiemann-Boege, Andrea Betancourt

Abstract

Here, we describe how peptide nucleic acid (PNA) probes can be used to enrich genomic DNA fractions to facilitate downstream analysis, such as the haplotype phasing of the isolated genomic pieces. This method enriches for polymorphic regions of fragmented chromosomes by physically separating the desired sequence and flanking regions. The PNA probes used for enrichment are novel synthetic nucleic acids with highly specific targeting and hybridization properties. Using a enrichment technique, we capture high molecular weight genomic DNA using nothing more than a simple modification to standard genomic DNA extraction from blood.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 5 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 5 100%

Demographic breakdown

Readers by professional status Count As %
Other 2 40%
Professor 1 20%
Student > Master 1 20%
Unknown 1 20%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 2 40%
Pharmacology, Toxicology and Pharmaceutical Science 1 20%
Engineering 1 20%
Unknown 1 20%