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Genotyping

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Cover of 'Genotyping'

Table of Contents

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    Book Overview
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    Chapter 1 Genetic Fingerprinting Using Microsatellite Markers in a Multiplex PCR Reaction: A Compilation of Methodological Approaches from Primer Design to Detection Systems
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    Chapter 2 Genotyping DNA Variants with High-Resolution Melting Analysis
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    Chapter 3 High-Throughput Genotyping with TaqMan Allelic Discrimination and Allele-Specific Genotyping Assays
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    Chapter 4 In Situ Single-Molecule RNA Genotyping Using Padlock Probes and Rolling Circle Amplification
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    Chapter 5 The MassARRAY® System for Targeted SNP Genotyping
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    Chapter 6 Genotyping
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    Chapter 7 Genotyping
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    Chapter 8 Analysis of Copy Number Variation Using the Paralogue Ratio Test (PRT)
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    Chapter 9 Genotyping Multiallelic Copy Number Variation with Multiplex Ligation-Dependent Probe Amplification (MLPA)
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    Chapter 10 Analysis of Multiallelic CNVs by Emulsion Haplotype Fusion PCR
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    Chapter 11 Quantitative DNA Analysis Using Droplet Digital PCR
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    Chapter 12 Full-Length Mitochondrial-DNA Sequencing on the PacBio RSII
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    Chapter 13 Targeted Locus Amplification and Next-Generation Sequencing
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    Chapter 14 Genotyping
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    Chapter 15 Rapid SNP Detection and Genotyping of Bacterial Pathogens by Pyrosequencing
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    Chapter 16 Methods for Genotyping-by-Sequencing
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    Chapter 17 Describing Sequence Variants Using HGVS Nomenclature
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Chapter title
Genotyping
Chapter number 14
Book title
Genotyping
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6442-0_14
Pubmed ID
Book ISBNs
978-1-4939-6440-6, 978-1-4939-6442-0
Authors

Chen, Yuan, Perfect, John R, Perfect, John R., Yuan Chen, John R. Perfect

Abstract

Multilocus sequence typing (MLST) has become the preferred method for genotyping many biological species. It can be used to identify major phylogenetic clades, molecular groups, or subpopulations of a species, as well as individual strains or clones. However, conventional MLST is costly and time consuming, which limits its power for genotyping large numbers of samples. Here, we describe a new MLST method that uses next-generation sequencing, a multiplexing protocol, and appropriate analytical software to provide accurate, rapid, and economical MLST genotyping of 96 or more isolates in a single assay.

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Mendeley readers

The data shown below were compiled from readership statistics for 12 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 8%
Unknown 11 92%

Demographic breakdown

Readers by professional status Count As %
Researcher 4 33%
Student > Bachelor 1 8%
Other 1 8%
Student > Ph. D. Student 1 8%
Student > Postgraduate 1 8%
Other 0 0%
Unknown 4 33%
Readers by discipline Count As %
Agricultural and Biological Sciences 2 17%
Biochemistry, Genetics and Molecular Biology 1 8%
Immunology and Microbiology 1 8%
Medicine and Dentistry 1 8%
Engineering 1 8%
Other 0 0%
Unknown 6 50%