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Genotyping

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Cover of 'Genotyping'

Table of Contents

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    Book Overview
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    Chapter 1 Genetic Fingerprinting Using Microsatellite Markers in a Multiplex PCR Reaction: A Compilation of Methodological Approaches from Primer Design to Detection Systems
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    Chapter 2 Genotyping DNA Variants with High-Resolution Melting Analysis
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    Chapter 3 High-Throughput Genotyping with TaqMan Allelic Discrimination and Allele-Specific Genotyping Assays
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    Chapter 4 In Situ Single-Molecule RNA Genotyping Using Padlock Probes and Rolling Circle Amplification
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    Chapter 5 The MassARRAY® System for Targeted SNP Genotyping
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    Chapter 6 Genotyping
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    Chapter 7 Genotyping
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    Chapter 8 Analysis of Copy Number Variation Using the Paralogue Ratio Test (PRT)
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    Chapter 9 Genotyping Multiallelic Copy Number Variation with Multiplex Ligation-Dependent Probe Amplification (MLPA)
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    Chapter 10 Analysis of Multiallelic CNVs by Emulsion Haplotype Fusion PCR
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    Chapter 11 Quantitative DNA Analysis Using Droplet Digital PCR
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    Chapter 12 Full-Length Mitochondrial-DNA Sequencing on the PacBio RSII
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    Chapter 13 Targeted Locus Amplification and Next-Generation Sequencing
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    Chapter 14 Genotyping
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    Chapter 15 Rapid SNP Detection and Genotyping of Bacterial Pathogens by Pyrosequencing
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    Chapter 16 Methods for Genotyping-by-Sequencing
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    Chapter 17 Describing Sequence Variants Using HGVS Nomenclature
Attention for Chapter 9: Genotyping Multiallelic Copy Number Variation with Multiplex Ligation-Dependent Probe Amplification (MLPA)
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Chapter title
Genotyping Multiallelic Copy Number Variation with Multiplex Ligation-Dependent Probe Amplification (MLPA)
Chapter number 9
Book title
Genotyping
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6442-0_9
Pubmed ID
Book ISBNs
978-1-4939-6440-6, 978-1-4939-6442-0
Authors

Suzan de Boer, Stefan J. White, Boer, Suzan de, White, Stefan J.

Abstract

Multiallelic copy number variants are genomic loci that can be present in a range of different copy numbers between individuals. High or low copy numbers of specific genes have been associated with different diseases. Precise genotyping of these loci can be complicated, and relies on accurate assays. Multiplex ligation-dependent probe amplification (MLPA) is a PCR-based approach that allows copy number determination of up to 50 genomic loci in a single reaction. In this chapter, we outline the basic protocol, with a particular emphasis on the appropriate approach to accurately genotype multiallelic copy numbers.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 4 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 4 100%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 1 25%
Other 1 25%
Student > Postgraduate 1 25%
Student > Doctoral Student 1 25%
Readers by discipline Count As %
Medicine and Dentistry 2 50%
Immunology and Microbiology 1 25%
Unknown 1 25%