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Genotyping

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Cover of 'Genotyping'

Table of Contents

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    Book Overview
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    Chapter 1 Genetic Fingerprinting Using Microsatellite Markers in a Multiplex PCR Reaction: A Compilation of Methodological Approaches from Primer Design to Detection Systems
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    Chapter 2 Genotyping DNA Variants with High-Resolution Melting Analysis
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    Chapter 3 High-Throughput Genotyping with TaqMan Allelic Discrimination and Allele-Specific Genotyping Assays
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    Chapter 4 In Situ Single-Molecule RNA Genotyping Using Padlock Probes and Rolling Circle Amplification
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    Chapter 5 The MassARRAY® System for Targeted SNP Genotyping
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    Chapter 6 Genotyping
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    Chapter 7 Genotyping
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    Chapter 8 Analysis of Copy Number Variation Using the Paralogue Ratio Test (PRT)
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    Chapter 9 Genotyping Multiallelic Copy Number Variation with Multiplex Ligation-Dependent Probe Amplification (MLPA)
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    Chapter 10 Analysis of Multiallelic CNVs by Emulsion Haplotype Fusion PCR
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    Chapter 11 Quantitative DNA Analysis Using Droplet Digital PCR
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    Chapter 12 Full-Length Mitochondrial-DNA Sequencing on the PacBio RSII
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    Chapter 13 Targeted Locus Amplification and Next-Generation Sequencing
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    Chapter 14 Genotyping
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    Chapter 15 Rapid SNP Detection and Genotyping of Bacterial Pathogens by Pyrosequencing
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    Chapter 16 Methods for Genotyping-by-Sequencing
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    Chapter 17 Describing Sequence Variants Using HGVS Nomenclature
Attention for Chapter 12: Full-Length Mitochondrial-DNA Sequencing on the PacBio RSII
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Chapter title
Full-Length Mitochondrial-DNA Sequencing on the PacBio RSII
Chapter number 12
Book title
Genotyping
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6442-0_12
Pubmed ID
Book ISBNs
978-1-4939-6440-6, 978-1-4939-6442-0
Authors

Rolf H. A. M. Vossen, Henk P. J. Buermans, Vossen, Rolf H. A. M., Buermans, Henk P. J.

Abstract

Conventional mitochondrial-DNA (MT DNA) sequencing approaches use Sanger sequencing of 20-40 partially overlapping PCR fragments per individual, which is a time- and resource-consuming process. We have developed a high-throughput, accurate, fast, and cost-effective human MT DNA sequencing approach. In this setup we first generate long-range PCR products for two partially overlapping 7.7 and 9.2 kb MT DNA-specific amplicons, add sample-specific barcodes, and sequence these on the PacBio RSII system to obtain full-length MT DNA sequences for genotyping/haplotyping purposes.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 13 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 13 100%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 3 23%
Student > Ph. D. Student 3 23%
Student > Master 3 23%
Researcher 2 15%
Professor 1 8%
Other 0 0%
Unknown 1 8%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 4 31%
Agricultural and Biological Sciences 3 23%
Pharmacology, Toxicology and Pharmaceutical Science 1 8%
Veterinary Science and Veterinary Medicine 1 8%
Immunology and Microbiology 1 8%
Other 1 8%
Unknown 2 15%