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Genotyping

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Cover of 'Genotyping'

Table of Contents

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    Book Overview
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    Chapter 1 Genetic Fingerprinting Using Microsatellite Markers in a Multiplex PCR Reaction: A Compilation of Methodological Approaches from Primer Design to Detection Systems
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    Chapter 2 Genotyping DNA Variants with High-Resolution Melting Analysis
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    Chapter 3 High-Throughput Genotyping with TaqMan Allelic Discrimination and Allele-Specific Genotyping Assays
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    Chapter 4 In Situ Single-Molecule RNA Genotyping Using Padlock Probes and Rolling Circle Amplification
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    Chapter 5 The MassARRAY® System for Targeted SNP Genotyping
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    Chapter 6 Genotyping
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    Chapter 7 Genotyping
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    Chapter 8 Analysis of Copy Number Variation Using the Paralogue Ratio Test (PRT)
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    Chapter 9 Genotyping Multiallelic Copy Number Variation with Multiplex Ligation-Dependent Probe Amplification (MLPA)
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    Chapter 10 Analysis of Multiallelic CNVs by Emulsion Haplotype Fusion PCR
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    Chapter 11 Quantitative DNA Analysis Using Droplet Digital PCR
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    Chapter 12 Full-Length Mitochondrial-DNA Sequencing on the PacBio RSII
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    Chapter 13 Targeted Locus Amplification and Next-Generation Sequencing
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    Chapter 14 Genotyping
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    Chapter 15 Rapid SNP Detection and Genotyping of Bacterial Pathogens by Pyrosequencing
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    Chapter 16 Methods for Genotyping-by-Sequencing
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    Chapter 17 Describing Sequence Variants Using HGVS Nomenclature
Attention for Chapter 1: Genetic Fingerprinting Using Microsatellite Markers in a Multiplex PCR Reaction: A Compilation of Methodological Approaches from Primer Design to Detection Systems
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Chapter title
Genetic Fingerprinting Using Microsatellite Markers in a Multiplex PCR Reaction: A Compilation of Methodological Approaches from Primer Design to Detection Systems
Chapter number 1
Book title
Genotyping
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6442-0_1
Pubmed ID
Book ISBNs
978-1-4939-6440-6, 978-1-4939-6442-0
Authors

Jacqueline Krüger, Dorit Schleinitz, Krüger, Jacqueline, Schleinitz, Dorit

Abstract

Microsatellites are polymorphic DNA loci comprising repeated sequence motifs of two to five base pairs which are dispersed throughout the genome. Genotyping of microsatellites is a widely accepted tool for diagnostic and research purposes such as forensic investigations and parentage testing, but also in clinics (e.g. monitoring of bone marrow transplantation), as well as for the agriculture and food industries. The co-amplification of several short tandem repeat (STR) systems in a multiplex reaction with simultaneous detection helps to obtain more information from a DNA sample where its availability may be limited. Here, we introduce and describe this commonly used genotyping technique, providing an overview on available resources on STRs, multiplex design, and analysis.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 29 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 29 100%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 8 28%
Student > Master 3 10%
Researcher 3 10%
Student > Ph. D. Student 3 10%
Other 2 7%
Other 2 7%
Unknown 8 28%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 10 34%
Agricultural and Biological Sciences 3 10%
Engineering 2 7%
Pharmacology, Toxicology and Pharmaceutical Science 1 3%
Veterinary Science and Veterinary Medicine 1 3%
Other 4 14%
Unknown 8 28%