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Epstein Barr Virus

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Cover of 'Epstein Barr Virus'

Table of Contents

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    Book Overview
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    Chapter 1 Current Trends and Alternative Scenarios in EBV Research.
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    Chapter 2 Epstein-Barr Virus: Clinical Diagnostics.
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    Chapter 3 Establishment of EBV-Infected Lymphoblastoid Cell Lines.
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    Chapter 4 Generation and Infection of Organotypic Cultures with Epstein-Barr Virus.
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    Chapter 5 Affinity Purification-Mass Spectroscopy Methods for Identifying Epstein-Barr Virus-Host Interactions.
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    Chapter 6 The Use of 3D Telomere FISH for the Characterization of the Nuclear Architecture in EBV-Positive Hodgkin's Lymphoma.
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    Chapter 7 Analysis of EBV Transcription Using High-Throughput RNA Sequencing.
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    Chapter 8 Analysis of Viral Promoter Usage in EBV-Infected Cell Lines: A Comparison of qPCR Following Conventional RNA Isolation and Nuclear Run-On Assay.
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    Chapter 9 Analysis of Viral and Cellular MicroRNAs in EBV-Infected Cells.
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    Chapter 10 Isolation and Characterization of Exosomes Released by EBV-Immortalized Cells.
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    Chapter 11 Functional Analysis of Exosomes Derived from EBV-Infected Cells.
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    Chapter 12 Terminal Repeat Analysis of EBV Genomes.
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    Chapter 13 Characterization of EBV Promoters and Coding Regions by Sequencing PCR-Amplified DNA Fragments.
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    Chapter 14 The Use of Chromatin Precipitation Coupled to DNA Sequencing (ChIP-Seq) for the Analysis of Zta Binding to the Human and EBV Genome.
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    Chapter 15 Analysis of Viral Epigenotypes Using Bisulfite Sequencing: A Detailed Protocol for the Crucial Bisulfite Modification and PCR Amplification Steps.
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    Chapter 16 Analysis of Viral Epigenotypes Using Chromatin Immunoprecipitation.
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    Chapter 17 Mice with Reconstituted Human Immune System Components as a Tool to Study Immune Cell Interactions in EBV Infection.
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    Chapter 18 Generation and Analysis of Humanized Mouse Model of EBV Infection.
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    Chapter 19 EBV-Directed T Cell Therapeutics for EBV-Associated Lymphomas.
Attention for Chapter 5: Affinity Purification-Mass Spectroscopy Methods for Identifying Epstein-Barr Virus-Host Interactions.
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Chapter title
Affinity Purification-Mass Spectroscopy Methods for Identifying Epstein-Barr Virus-Host Interactions.
Chapter number 5
Book title
Epstein Barr Virus
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6655-4_5
Pubmed ID
Book ISBNs
978-1-4939-6653-0, 978-1-4939-6655-4
Authors

Anna A. Georges, Lori Frappier

Editors

Janos Minarovits, Hans Helmut Niller

Abstract

Considerable insight into the function and mechanism of action of viral proteins has come from identifying the cellular proteins with which they interact. In recent years, mass spectrometry-based methods have emerged as the method of choice for protein interaction discovery due to their comprehensive and unbiased nature. Methods involving single affinity purifications of epitope-tagged viral proteins (AP-MS) and tandem affinity purifications of viral proteins with two purification tags (TAP tagging) have both been used to identify novel host interactions with EBV proteins. However, to date these methods have only been applied to a small number of EBV proteins. Here we provide detailed methods of AP-MS and TAP tagging approaches that can be applied to any EBV protein in order to discover its host interactions.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 5 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 5 100%

Demographic breakdown

Readers by professional status Count As %
Unspecified 1 20%
Student > Master 1 20%
Unknown 3 60%
Readers by discipline Count As %
Unspecified 1 20%
Agricultural and Biological Sciences 1 20%
Unknown 3 60%