↓ Skip to main content

Chromatin Protocols

Overview of attention for book
Cover of 'Chromatin Protocols'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Beads-on-a-String on a Bead: Reconstitution and Analysis of Chromatin on a Solid Support.
  3. Altmetric Badge
    Chapter 2 Preparation and analysis of positioned mononucleosomes.
  4. Altmetric Badge
    Chapter 3 Chromatin imaging with time-lapse atomic force microscopy.
  5. Altmetric Badge
    Chapter 4 Isolation of Specific Genomic Regions and Identification of Associated Molecules by Engineered DNA-Binding Molecule-Mediated Chromatin Immunoprecipitation (enChIP) Using CRISPR.
  6. Altmetric Badge
    Chapter 5 Drug-Induced Premature Chromosome Condensation (PCC) Protocols: Cytogenetic Approaches in Mitotic Chromosome and Interphase Chromatin.
  7. Altmetric Badge
    Chapter 6 Analysis of genomic aberrations using comparative genomic hybridization of metaphase chromosomes.
  8. Altmetric Badge
    Chapter 7 Histone Deacetylase Activity Assay
  9. Altmetric Badge
    Chapter 8 In vitro histone demethylase assays.
  10. Altmetric Badge
    Chapter 9 Integrated DNA methylation and chromatin structural analysis at single-molecule resolution.
  11. Altmetric Badge
    Chapter 10 Determination of DNA Methylation Levels Using Illumina HumanMethylation450 BeadChips.
  12. Altmetric Badge
    Chapter 11 Investigation of genomic methylation status using methylation-specific and bisulfite sequencing polymerase chain reaction.
  13. Altmetric Badge
    Chapter 12 In vitro and in vivo assays for studying histone ubiquitination and deubiquitination.
  14. Altmetric Badge
    Chapter 13 Immunostaining analysis of tissue cultured cells and tissue sections using phospho-histone h3 (serine 10) antibody.
  15. Altmetric Badge
    Chapter 14 Identification and characterization of nonhistone chromatin proteins: human positive coactivator 4 as a candidate.
  16. Altmetric Badge
    Chapter 15 Methods to study transcription-coupled repair in chromatin.
  17. Altmetric Badge
    Chapter 16 Analysis of DNA replication associated chromatin decondensation: in vivo assay for understanding chromatin remodeling mechanisms of selected proteins.
  18. Altmetric Badge
    Chapter 17 Non-radioactive Assay Methods for the Assessment of Telomerase Activity and Telomere Length
  19. Altmetric Badge
    Chapter 18 Detecting ATM-Dependent Chromatin Modification in DNA Damage Response.
  20. Altmetric Badge
    Chapter 19 Imaging Local Deposition of Newly Synthesized Histones in UVC-Damaged Chromatin.
  21. Altmetric Badge
    Chapter 20 In vitro replication assay with Mammalian cell extracts.
  22. Altmetric Badge
    Chapter 21 Fluorescent In Situ Hybridization on Comets: FISH Comet.
  23. Altmetric Badge
    Chapter 22 Methods to study histone chaperone function in nucleosome assembly and chromatin transcription.
  24. Altmetric Badge
    Chapter 23 Preparation of Mononucleosomal Templates for Analysis of Transcription with RNA Polymerase Using spFRET.
  25. Altmetric Badge
    Chapter 24 Transcriptome-Wide Identification of In Vivo Interactions Between RNAs and RNA-Binding Proteins by RIP and PAR-CLIP Assays.
  26. Altmetric Badge
    Chapter 25 Chromatin immunoprecipitation assays: analyzing transcription factor binding and histone modifications in vivo.
  27. Altmetric Badge
    Chapter 26 ChIP on Chip and ChIP-Seq Assays: Genome-Wide Analysis of Transcription Factor Binding and Histone Modifications.
  28. Altmetric Badge
    Chapter 27 ChIP-on-Chip Analysis Methods for Affymetrix Tiling Arrays.
Attention for Chapter 20: In vitro replication assay with Mammalian cell extracts.
Altmetric Badge

Citations

dimensions_citation
1 Dimensions

Readers on

mendeley
6 Mendeley
You are seeing a free-to-access but limited selection of the activity Altmetric has collected about this research output. Click here to find out more.
Chapter title
In vitro replication assay with Mammalian cell extracts.
Chapter number 20
Book title
Chromatin Protocols
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2474-5_20
Pubmed ID
Book ISBNs
978-1-4939-2473-8, 978-1-4939-2474-5
Authors

Rizwani, Wasia, Chellappan, Srikumar P, Wasia Rizwani, Srikumar P. Chellappan

Abstract

Regulatory mechanisms are crucial to control DNA replication during cell cycle in eukaryotic cells. Cell-free in vitro replication assay (IVRA) is one of the widely used assays to understand the complex mammalian replication system. IVRA can provide a snapshot of the regulatory mechanisms controlling replication in higher eukaryotes by using a single plasmid, pEPI-1. This chapter outlines the general strategies and protocols used to perform IVRA to study the differential recruitment of replication factors either independently or in combination, based on the experience in studying the role of prohibitin in replication as well as other published protocols. This method can be employed to identify not only proteins that assist replication but also proteins that inhibit replication of mammalian genome.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 6 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 6 100%

Demographic breakdown

Readers by professional status Count As %
Student > Master 2 33%
Researcher 2 33%
Professor 1 17%
Professor > Associate Professor 1 17%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 3 50%
Agricultural and Biological Sciences 1 17%
Immunology and Microbiology 1 17%
Unknown 1 17%